Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001835465.1_202016-10-24] 107 sequences; 45,820,083 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq97 149 1e-30 seq93 131 3e-25 >seq97 Length=261666 Score = 149 bits (164), Expect = 1e-30 Identities = 300/440 (68%), Gaps = 9/440 (2%) Strand=Plus/Plus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 |||||||||||||| || || || |||||||| || || || || |||||||| |||||| Sbjct 3616 GTTGCCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGCGCCTTTGCATCCATCTTCTGG 3675 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 ||||||| | ||| | |||| || || |||| ||||| ||| |||| ||| | ||| Sbjct 3676 CTCAAGAAGCGAGGTCTCATGCCCGGCCTGACCTTTTCCAACGAGCTCATCTCTCGTGAC 3735 Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACC--- 102094 || ||||| || ||||||||| ||| |||||| | | || ||| Sbjct 3736 GAGGGTCTGCACACCGACTTTGCCTGC---CTGTTG-CACTCCCACCTCAAGA-ACCGCG 3790 Query 102095 CCATCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTT 102154 ||| |||| || ||| | ||| || |||| || || ||||||||||| ||||| || Sbjct 3791 CCAGCAAG-GAGGTGATCCGTGACATCATCACCGATGCTGTCCGAATTGAGCAAGAGTTC 3849 Query 102155 CTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTAC 102214 | || | | || || | |||| ||||||| ||| ||||||| |||||| Sbjct 3850 TTGACCGAGGCTCTCCCCTGCGCCCTGCTGGGCATGAACTCCAACTTGATGAAGCAGTAC 3909 Query 102215 ATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAATGTT 102274 || || ||||| || || || | |||| | || || ||| ||| || | Sbjct 3910 ATCGAGTTTGTTGCTGACCGCCTGCTTGTTGCTCTCGGCAACGAGAAGATCTACAAGTCT 3969 Query 102275 ACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTGAA 102334 |||||||||| || ||||| || ||||| || | ||||||||||| ||||| Sbjct 3970 TCCAACCCCTTTGACTTTATGGAGAACATTTCTCTTGGTGGCAAGACCAACTTCTTTGAG 4029 Query 102335 AAGAGAGTCGCCGAGTATCA 102354 ||| | || ||||| || || Sbjct 4030 AAGCGTGTTGCCGACTACCA 4049 >seq93 Length=305044 Score = 131 bits (144), Expect = 3e-25 Identities = 419/643 (65%), Gaps = 14/643 (2%) Strand=Plus/Plus Query 94407 CTCATATTTCTCGTACAACGCCTTAAACTCTTCGCCATGGACGTCGGAAAGGCCAGGGCA 94466 ||| || ||||| ||||| |||| ||||| ||||||| | ||| | |||||||||||| Sbjct 225000 CTCGTACTTCTCATACAAAGCCTCGAACTCCTCGCCATAGCAGTCAGCAAGGCCAGGGCA 225059 Query 94467 CTCGTGGGGGCACATCAGGGACCAATTCTTCCCAGC-CTTC---ACTCTCTCCATGAAGA 94522 ||||| ||||||||| || | ||| | || || |||| || | || |||||||| Sbjct 225060 CTCGTTGGGGCACATGAGCGTCCAGT----CCAAGTTCTTCTCAACACGCTTCATGAAGA 225115 Query 94523 GATCAGATACCCAGATAGCTGGGAAAAGATCCCTCGTCCTCAAATCTTCATTACCGGCAT 94582 |||| | | ||||| ||| |||| | || | | | | || || |||||| | Sbjct 225116 GATCGGGAATCCAGAGAGCAAGGAATAAGTCGCGAGCACGGACCTCCTCCTTACCGTGGT 225175 Query 94583 TCTTTCTGCAGTCAATAAAGTCCTTCACGTCCAGATGCCAATCAGAAATATAGATGGCTG 94642 |||| | | |||| || || || || ||||| | |||||||| Sbjct 225176 TCTTGCGGAGATCAAGGAACTCAAAGACATCAGCGTGCCATGGCTCCAGGTAGATGGCAA 225235 Query 94643 CAGCTCCTCTCCTCTTGTCTCCTCCCTGGCTAACCTTTTTCACAGAGACGTTAAAGATTT 94702 || || | ||||| || |||||| || | | | ||| | ||| |||| | Sbjct 225236 AGGCACCAGGACGCTTGTTGCCACCCTGGTCGACGTATCTGGCAGTGTTGTTGAAGACTC 225295 Query 94703 GGAGGAACGCCATGAGACCAGGGTGG--GTACCACTCCATGACGAAATGGGGCTTCCTTT 94760 | || | | |||| ||| | ||| ||||| | || |||| || | Sbjct 225296 GAAGCATGGGAATGATACC--GTTGGAAGTACCGTTGGTGCCCGCAATGTAAGAACCGGT 225353 Query 94761 TGCCCTCAAATCATGAAAGTGGATGCCGAGTCCTCCAGCAGTCTTGGAGATGATTGCCGC 94820 || | | || | || | ||||| || ||||| ||||||| || || || Sbjct 225354 GGCACGGATGCGGTGGACGTTCAAGCCGATGCCGCCAGCCATCTTGGAAATCATGGCACA 225413 Query 94821 CTCCTTAAGAGTATCATAAATACCCTCAATGCTATCATCTTGAAGGCCCAGAAGGAAGCA 94880 | ||| ||||| ||||| ||||||||||||||||| || | | | | | | |||||| Sbjct 225414 CGTCTTCAGAGTGTCATAGATACCCTCAATGCTATCGTCCTTCATGTCAACCAAGAAGCA 225473 Query 94881 CGAGGAAAGTTGGGG-TGTGACTGTTCCACAATTAAACAGTGTGGGGGAAGCATGGGTAA 94939 || || || |||| || | || ||| || || || |||||||| || ||||| | Sbjct 225474 TGAAGACAGCTGGGCCTGCGGG-GTACCAGCGTTGAAGAGGGTGGGGGAGGCGTGGGTGA 225532 Query 94940 AATAGTGCCTCGACATGAGATCATATGTTTCAATGACAGATTTGATGTCTGATCCGTGAA 94999 | | | ||||||||||| | ||||| || | |||| | ||||| ||| | Sbjct 225533 AGAACTTGCTCGACATGAGGTGGTATGTCTCCAGGACACGCTCAATGTCGTCTCCCCAGA 225592 Query 95000 TGCCGACAGCCACACGCATAATCATGTCCTGAGGGCGCTCAAC 95042 |||| |||||||| ||||||||||||| ||| || |||||||| Sbjct 225593 TGCCAACAGCCACTCGCATAATCATGTGCTGTGGTCGCTCAAC 225635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989582643342185