Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001835465.1_202016-10-24] 107 sequences; 45,820,083 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq97 167 3e-36 >seq97 Length=261666 Score = 167 bits (184), Expect = 3e-36 Identities = 374/558 (67%), Gaps = 8/558 (1%) Strand=Plus/Minus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || || || ||| ||||||||||||||| | | || | ||||| ||||| || || Sbjct 3761 CAGGCAAAGTCGGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGG 3702 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 |||||||| || || ||||| || ||||| || ||||| || || | ||| |||||| Sbjct 3701 CCGGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGATGCAAAGGCGCCGCTGAAGAAG 3642 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCA---TAACCGGCGCTGTCATGT 33758 || || || || ||||||||||||| || | || || || | |||| || Sbjct 3641 ATACCCTCGACGGCAGCAAAGGCAACCAGGCGCTGAGCAAAGGAAGAGTTCTTGTCCTGG 3582 Query 33759 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33818 |||||||| ||||| || |||||||| | ||||| || || || ||||| || Sbjct 3581 ATCCACTTGATGGCCCAGTCAGCCTTCTTGCGAATGCAAGGGATAGTCTCAATGGCGTTG 3522 Query 33819 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 33878 ||||||||||| | | | || || | || || ||||| | || || | Sbjct 3521 AAGAGATAGTTGCGCTGGCTGTTCTCCTTGATGTAGGTGTCGATGAGCAGGGAGTAGGTC 3462 Query 33879 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33938 || || || ||||| || || ||||| || |||||||| |||| |||||||| ||| Sbjct 3461 TCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGAGCCTCGGGGATC 3402 Query 33939 TGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCA 33998 || || || | || || || | | || || || || || |||||| ||| ||| Sbjct 3401 TGGACCTCGCCGCTGAAGCGCTCGACCAGGTTCTCGTTGACAATGCCATCAGAGGCGGCA 3342 Query 33999 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTA---GTTTATTCCA 34054 || || |||| | || || || || || ||||| | || | | | || ||||| Sbjct 3341 AAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGT-TCAGGCGGTTGTTCCA 3283 Query 34055 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 34114 || | | ||| || || | || | ||||| | ||||| || || ||||| ||||| Sbjct 3282 GTCGTGCAGATCCTTGGACAGGTCAATCTCTTCGGCGGTCCAGAAGGAAGCCTCGGCCTT 3223 Query 34115 TTTATACATATTCCAGAT 34132 || ||||| | |||||| Sbjct 3222 CTTGTACATTTGCCAGAT 3205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629816757618960