Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001835465.1_202016-10-24] 107 sequences; 45,820,083 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq97 107 2e-18 seq1 107 2e-18 >seq97 Length=261666 Score = 107 bits (118), Expect = 2e-18 Identities = 350/534 (66%), Gaps = 11/534 (2%) Strand=Plus/Plus Query 52532 TCAACGCTTTTGACAATGTTCCGTGTGTGCGCAAAAAGGATGATTGGGCATTGAAATGGA 52591 ||||||| |||| | | | || || | ||||| |||| ||| ||||| | || |||| Sbjct 3521 TCAACGCCATTGAGACTATCCCTTGCATTCGCAAGAAGGCTGACTGGGCCATCAAGTGGA 3580 Query 52592 TCGAAAACGACAAAGCCACTTTTGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAGGTG 52651 || | || | || | | ||||| | || ||||| || |||||| || || ||| Sbjct 3581 TCCAGGACAAGAACTCTTCCTTTGCTCAGCGCCTGGTTGCCTTTGCTGCCGTCGAGGGTA 3640 Query 52652 TGtttttttCGGGTAGTTTTGCGGCAATATTTTACATCAA-AACCTTGGGCATAATGCCC 52710 | || || || ||||| | || || | |||| || | || | | |||||| Sbjct 3641 TCTTCTTCAGCGGCGCCTTTGCATCCATCTTCTGGCTCAAGAAGCGAGGTC-TCATGCCC 3699 Query 52711 GGCCTCACGTTTAGCAACGAGTTGATATCGCGCGACGAAGGAATGCACACAGATTTTGCG 52770 ||||| || ||| ||||||| | || || || ||||| || ||||||| || ||||| Sbjct 3700 GGCCTGACCTTTTCCAACGAGCTCATCTCTCGTGACGAGGGTCTGCACACCGACTTTGCC 3759 Query 52771 TGTTTGTATTATAATACGCGCGTTAAAGAAAAATTGTCAT--ATGAAAAAATTCTAGACA 52828 || ||| | | | | | | ||||| | || | || || | |||| Sbjct 3760 TGCCTGT--TGCACTCCCACC--TCAAGAACCGC-GCCAGCAAGGAGGTGATCCGTGACA 3814 Query 52829 TGTTTAAAGAGGCCGTCGACATTGAAAAAGAGTTTTTTACGGACGCTTTACCCGTATCAT 52888 | | | || || ||| ||||| ||||||| || || || ||| | ||| | Sbjct 3815 TCATCACCGATGCTGTCCGAATTGAGCAAGAGTTCTTGACCGAGGCTCTCCCCTGCGCCC 3874 Query 52889 TGTTGGGCATGAACGCGACCATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGACTG- 52947 || ||||||||||| | | | ||||| ||||||||||||||||||| ||| | ||| Sbjct 3875 TGCTGGGCATGAACTCCAACTTGATGAAGCAGTACATCGAGTTTGTTGCTGACCGCCTGC 3934 Query 52948 TTGATGCAGCTCGGTCAGCCGAAATACTATAATGCGCGTAACCCCTTTTCGTTTATGAAC 53007 ||| ||| ||||| | ||| ||| || | ||||||||| |||||| | Sbjct 3935 TTGTTGC-TCTCGGCAACGAGAAGATCTACAAGTCTTCCAACCCCTTTGACTTTATGGAG 3993 Query 53008 AACATATCGCTCGAGGGCAAAACAAACTTTTTCGAGAGACGTGTGGGCGAGTAC 53061 ||||| || || | ||||| || ||||| || |||| ||||| | ||| ||| Sbjct 3994 AACATTTCTCTTGGTGGCAAGACCAACTTCTTTGAGAAGCGTGTTGCCGACTAC 4047 >seq1 Length=17084797 Score = 107 bits (118), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614 ||| ||||| | |||||||| || || ||||| || ||| || || | ||| || Sbjct 3412635 AACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTTCGGCCGTCCTC 3412694 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 ||| || || |||||| |||| ||||| ||||| || ||||| || || || ||||| | Sbjct 3412695 GAGTTGCTTGCCAGCAAAGATAAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCC-T 3412753 Query 139675 GATTTTTTGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCT 139733 || | || | || | | || | ||||||| | ||||||||||| ||| | |||| Sbjct 3412754 GAATCTTGGACTTCACATTGTCGATGGTGTCGGATGACTCCACCTCAAGGGTGATAGTCT 3412813 Query 139734 TGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | ||||||| || || ||||| |||||||| Sbjct 3412814 TACCGGTCAGGGTCTTGACGAAGATTTGCAT 3412844 Score = 102 bits (112), Expect = 8e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 ||||| || || | || | || ||||| | || ||| || || ||||| || ||| Sbjct 3411873 TGGCCACCACGAAGGCGAAGGACCAAGTGCAGTGTGCTCTCCTTCTGGATGTTGTAGTCG 3411932 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 |||| |||| |||||| ||||| |||||||| |||||| || ||||| || ||| Sbjct 3411933 CTCAAGGTGCGACCGTCTTCCAGCTGCTTACCAGCGAAGATCAAGCGCTGCTGGTCAGGA 3411992 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCC 139714 || ||||| || ||||| ||| || || | | || | || || | | |||| Sbjct 3411993 GGAATGCCCTCCTTGTCTTGGATCTTGGACTTGACGTTGTCGATGGTATCAGAAGACTCC 3412052 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||| | ||| | ||||||||||||| || || || || ||||||||| Sbjct 3412053 ACCTCGAGGGTGATAGTCTTGCCGGTCAGGGTCTTGACAAAGATTTGCATA 3412103 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 |||| || | ||| | |||||||| || || ||||| || ||||||| |||| Sbjct 1761272 CGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCA 1761213 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 || || ||||| |||||||| |||||| || ||||| || || || ||||| || ||| Sbjct 1761212 TCCTCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTG 1761153 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || | | || | ||||||| | ||||||||||| ||| | | Sbjct 1761152 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATC 1761093 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| || || | || || ||||| || ||||| Sbjct 1761092 GTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 1761058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496063336514400