Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001835465.1_202016-10-24] 107 sequences; 45,820,083 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq97 158 2e-33 >seq97 Length=261666 Score = 158 bits (174), Expect = 2e-33 Identities = 371/557 (67%), Gaps = 6/557 (1%) Strand=Plus/Minus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || || || ||| ||||||||||||||| | | || || ||||||||||| || || Sbjct 3761 CAGGCAAAGTCGGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGG 3702 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAG 50079 |||||||| || || ||||| || ||||| || ||||| ||||| | || |||||| Sbjct 3701 CCGGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGATGCAAAGGCGCCGCTGAAGAAG 3642 Query 50080 ATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCA---TAACTGGCGCTGTCATGT 50136 || || || || || ||||||||||| || | || || || | |||| || Sbjct 3641 ATACCCTCGACGGCAGCAAAGGCAACCAGGCGCTGAGCAAAGGAAGAGTTCTTGTCCTGG 3582 Query 50137 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 50196 |||||||| ||||| || |||||||| | ||||| || || || ||||| || Sbjct 3581 ATCCACTTGATGGCCCAGTCAGCCTTCTTGCGAATGCAAGGGATAGTCTCAATGGCGTTG 3522 Query 50197 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 50256 ||||||||||| | | | || || | || || ||||| | || || | Sbjct 3521 AAGAGATAGTTGCGCTGGCTGTTCTCCTTGATGTAGGTGTCGATGAGCAGGGAGTAGGTC 3462 Query 50257 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 50316 || || || ||||| || || ||||| || |||||||| |||| |||||||| ||| Sbjct 3461 TCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGAGCCTCGGGGATC 3402 Query 50317 TGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 50376 || || || | || || || | | || || || || || || ||| ||| ||| Sbjct 3401 TGGACCTCGCCGCTGAAGCGCTCGACCAGGTTCTCGTTGACAATGCCATCAGAGGCGGCA 3342 Query 50377 AAAAACGCCAATACATGTTTTATAAAATGTTTTTCGT--TGGGT-GTTAGTTTATTCCAA 50433 || || |||| | || || || | || |||| | | | | || ||||| Sbjct 3341 AAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTCCAG 3282 Query 50434 TCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 50493 || | | ||| || || | || | ||||| | ||||| || || ||||| ||||| Sbjct 3281 TCGTGCAGATCCTTGGACAGGTCAATCTCTTCGGCGGTCCAGAAGGAAGCCTCGGCCTTC 3222 Query 50494 TTATACATATTCCAGAT 50510 || ||||| | |||||| Sbjct 3221 TTGTACATTTGCCAGAT 3205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718267839315480