Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001835465.1_202016-10-24] 107 sequences; 45,820,083 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq97 264 2e-65 seq93 132 7e-26 >seq97 Length=261666 Score = 264 bits (292), Expect = 2e-65 Identities = 579/852 (68%), Gaps = 39/852 (5%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| |||||||||| ||||| |||| ||||| ||||| | ||||||| | || ||| Sbjct 3205 ATCTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACCGCCGAAGAGATTGACCTG 3264 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAG----TTTAT 125134 |||||||| ||| |||| ||| | | || ||| || ||| ||||| || || Sbjct 3265 TCCAAGGATCTGCACGACTGGAACAACCGCCTGAACGA---TGA-CGAGAAGTACTTCAT 3320 Query 125135 ATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGAC 125194 || ||||| ||||||||||||||| ||| ||||| || |||||||| || ||| | Sbjct 3321 CTCTCACATCCTGGCCTTCTTTGCCGCCTCTGATGGCATTGTCAACGAGAACCTGGTCGA 3380 Query 125195 ACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCA 125253 || ||| ||| | || || |||| ||| ||||| ||||| ||||| |||| Sbjct 3381 GCGCTTCAGCGGCGAGGTCCAGATCCCCGAGGC-TCGATGCTTCTACGGCTTCCAGATCA 3439 Query 125254 TGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTC--GCGA 125311 |||| |||||| | ||||| || | ||||| || || |||| ||||| | || Sbjct 3440 TGATGGAGAACATCCACTCCGAGACCTACTCCCTGCTCATCGACACCTACATCAAGGAGA 3499 Query 125312 TCCGCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAA 125371 | || | ||| || ||||| ||||| || || || | || | || || || || Sbjct 3500 ACAGCCAGCGCAACT-AT-CTCTTCAACGCCATTGAGACTATCCCTTGCATTCGCAAGAA 3557 Query 125372 GGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGT 125431 |||| | |||| || ||||||| | ||| | || ||||| | || | | ||||| Sbjct 3558 GGCTGACTGGGCCATCAAGTGGATCCAGGACAAGAACTCTTCCTTTGCTCAGCGCCTGGT 3617 Query 125432 GGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCT 125491 || || || ||||| ||||| |||||||| || ||||| ||||||| ||||| Sbjct 3618 TGCCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGCGCCTTTGCATCCATCTTCTGGCT 3677 Query 125492 CAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGA 125551 ||||||||| || ||||||||||| ||||| |||||| | || ||||| ||||| Sbjct 3678 CAAGAAGCGAGGTCTCATGCCCGGCCTGACCTTTTCCAACGAGCTCATCTCTCGTGACGA 3737 Query 125552 GGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAG 125611 ||| || ||| ||||||||| | | ||||| | | | | || | || | | Sbjct 3738 GGGTCTGCACACCGACTTTGCC-TGC--CTGTTGCACTCCCACCT------CAAGAACCG 3788 Query 125612 ATCCAGCGATGAAAAGGTCATC---AACATTGTAACCGATGCCGTGAGGATAGAACAAGA 125668 ||||| | | |||| ||| |||| | |||||||| || | || || ||||| Sbjct 3789 CGCCAGCAAGG---AGGTGATCCGTGACATCATCACCGATGCTGTCCGAATTGAGCAAGA 3845 Query 125669 GTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGA 125728 ||| | ||||| | || || | | || | |||||||||| ||| | ||| | Sbjct 3846 GTTCTTGACCGAGGCTCTCCCCTGCGCCCTGCTGGGCATGAACTCCAACTTGATGAAGCA 3905 Query 125729 GTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTG--ATTGGC--CG-CAAGATT 125783 |||||| |||||||| || || || || || |||| | ||| || ||||| Sbjct 3906 GTACATCGAGTTTGTTGCTGACCGCCTGCT-----TGTTGCTCTCGGCAACGAGAAGATC 3960 Query 125784 TACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAAC 125843 ||||| | || |||||||| || ||| | ||| || || | || ||||||||| Sbjct 3961 TACAAGTCTTCCAACCCCTTTGACTTTATGGAGAACATTTCTCTTGGTGGCAAGACCAAC 4020 Query 125844 TTTTTCGAGAAG 125855 || || |||||| Sbjct 4021 TTCTTTGAGAAG 4032 >seq93 Length=305044 Score = 132 bits (146), Expect = 7e-26 Identities = 311/463 (67%), Gaps = 16/463 (3%) Strand=Plus/Minus Query 96865 GATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTT 96924 ||||||| ||||| ||||| || || || || || | ||| ||||| |||| || | Sbjct 225274 GATACGTCGACCAGGGTGGCAACAAGCGTCCTGGTGCCTTTGCCATCTACCTGGAGCCAT 225215 Query 96925 GGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCAC 96984 ||||||| || || ||||| || | || | ||||| ||| || || |||| | Sbjct 225214 GGCACGCTGATGTCTTTGAGTTCCTTGATCTCCGCAAGAACCACGGTAAGGAGGAGGTCC 225155 Query 96985 GAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGT--CAA 97042 | || | ||||| || ||| |||||| | || ||| | ||||||||||| || | Sbjct 225154 GTGCTCGCGACTTATTCCTTGCTCTCTGGATTCCCGATCTCTTCATGAAGCGTGTTGAGA 225095 Query 97043 CGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTG 97102 || ||| |||||| || ||||||||| || || || || || | || |||| Sbjct 225094 AGAACTTGG--ACTGGACGCTCATGTGCCCCAACGAGTGCCCTGGCCTTGCTGACTGCTA 225037 Query 97103 GGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACG 97162 ||||| ||||| ||||| ||| | |||||| | ||||| ||||| | || Sbjct 225036 TGGCGAGGAGTTCGAGGCTTTGTATGAGAAGTACGAGAAGGAGGG-----ACGTG-GTCG 224983 Query 97163 --AGTCGATGCACG---AGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGG 97216 || | || | || |||| |||||| | ||||| || || ||| |||||||| Sbjct 224982 CAAGACTATCCGCGCTCAGAAGCTGTGGTATTCCATCCTGGAAGCCCAGACCGAGACTGG 224923 Query 97217 AACTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGG 97276 | || | ||| ||||||||||| | || ||||| |||||||| || |||| Sbjct 224922 CAACCCCTTCATGCTCTACAAGGACCACTGCAACCGCAAGAGCAACCAGAAGAACCTGGG 224863 Query 97277 CACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTAC 97319 |||||| |||| || || ||||| || ||| | |||||| Sbjct 224862 TACCATCCGCAGCTCTAACCTCTGCACTGAGATTATTGAGTAC 224820 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741058208833320