Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001835465.1_202016-10-24] 107 sequences; 45,820,083 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1 134 3e-26 >seq1 Length=17084797 Score = 134 bits (148), Expect = 3e-26 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || ||||| || || ||||| || ||||||| ||||| || ||||| || ||| Sbjct 3412648 GTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTTCGGCCGTCCTCGAGTTGCTTGCCA 3412707 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | ||| || |||||||| || || || || ||||||||||| | || Sbjct 3412708 GCAAAGATAAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGAATCTTGGACTTC 3412767 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| ||| | || ||||| || || ||||||||||| || || || Sbjct 3412768 ACATTGTCGATGGTGTCGGATGACTCCACCTCAAGGGTGATAGTCTTACCGGTCAGGGTC 3412827 Query 104543 TTTACAAATATCTGCAT 104559 || || || || ||||| Sbjct 3412828 TTGACGAAGATTTGCAT 3412844 Score = 123 bits (136), Expect = 6e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 || |||||||| || ||||| | ||| | ||||| || || || || |||||||| Sbjct 3412140 TCCTTCTGAATGTTGTAGTCGCTCAAAGTGCGGCCGTCCTCAAGCTGCTTGCCAGCAAAG 3412199 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || || | ||| ||||| || || || || || |||||||||||||||| || ||||| Sbjct 3412200 ATAAGACGCTGCTGATCCGGGGGGATACCCTCCTTATCCTGAATCTTTGACTTGACATTG 3412259 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 || | |||||| || || ||||| || || |||||||| ||||| || || || || Sbjct 3412260 TCGATGGTATCAGAAGACTCCACCTCGAGGGTGATAGTCTTGCCAGTCAGGGTCTTGACG 3412319 Query 104549 AATATCTGCAT 104559 || |||||||| Sbjct 3412320 AAAATCTGCAT 3412330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151396821504756