Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001835465.1_202016-10-24] 107 sequences; 45,820,083 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq48 113 4e-20 >seq48 Length=508424 Score = 113 bits (124), Expect = 4e-20 Identities = 179/252 (71%), Gaps = 6/252 (2%) Strand=Plus/Plus Query 5503 GCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCTTC 5562 ||||||| || ||||| || || ||||| | | || ||||| | ||||||| | Sbjct 60530 GCCCGTGCTTCCAAATCCACCGGCTCCTCTCACGCTCTCCTCCAGCTCCTCCACCTCGAC 60589 Query 5563 CACATCGGGGAACGCAGCGCGCTCGCAGATCA-GCTGCGCTATTCGGTCGCCCGTCTTTA 5621 || ||||| | || | ||| ||| || |||| || |||||||||||| ||| | Sbjct 60590 GACGTCGGGAGTCACAATCCTCTC-CAGCACAAGCTGGGCAATTCGGTCGCCCTCCTTGA 60648 Query 5622 CCTCGAAATCGTTGTGGCCGAA--GTTGAACAGCACCACGCCCACGTTGCCGCGGTAGTC 5679 |||| | ||| || ||| | ||||||||| | || | |||||||||||| Sbjct 60649 TCTCGTAGTCGGCGT--CCGCATGGTTGAACAGAAGAACCTTGAGCGGGCCGCGGTAGTC 60706 Query 5680 GGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGGG 5739 ||||| || |||||||| || |||||||||||||||| ||| ||||| |||||||| Sbjct 60707 AGCGTCGATGACGCCCGCACCGGTGTCGATGAAGTGCTTGGACGCGAGGCCCGAGCGGGG 60766 Query 5740 AGCCACGCGGCC 5751 ||| | ||||| Sbjct 60767 AGCAATACGGCC 60778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430053839182184