Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001835465.1_202016-10-24] 107 sequences; 45,820,083 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq1 114 1e-20 >seq1 Length=17084797 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||||||||||||||| ||||||||||| || ||| || ||||||| |||||| Sbjct 3412128 TGAAGTGTGCTCTCCTTCTGAATGTTGTAGTCGCTCAAAGTGCGGCCGTCCTCAAGCTGC 3412187 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || || | | || | ||||||||||||| || | || ||||| ||| ||| || Sbjct 3412188 TTGCCAGCAAAGATAAGACGCTGCTGATCCGGGGGGATACCCTCCTTATCCTGAATCTTT 3412247 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||| | | |||||||| | ||||||| ||||| || || || || || || Sbjct 3412248 GACTTGACATTGTCGATGGTATCAGAAGACTCCACCTCGAGGGTGATAGTCTTGCCAGTC 3412307 Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726 || || || || ||||||||||| Sbjct 3412308 AGGGTCTTGACGAAAATCTGCAT 3412330 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || || || |||||||||||||| || |||||||| || ||| || |||| ||| Sbjct 3411894 ACCAAGTGCAGTGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGACCGTCTTCC 3411953 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 ||||||||||| || | || || |||||||| || || | | |||||||| Sbjct 3411954 AGCTGCTTACCAGCGAAGATCAAGCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCTTGG 3412013 Query 48638 ATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 || || ||||| | | || |||||||| | ||||||| ||||| || || || | Sbjct 3412014 ATCTTGGACTTGACGTTGTCG--ATGGTATCAGAAGACTCCACCTCGAGGGTGATAGTCT 3412071 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | ||||| || || || ||||| || ||||| Sbjct 3412072 TGCCGGTCAGGGTCTTGACAAAGATTTGCAT 3412102 Score = 93.3 bits (102), Expect = 4e-14 Identities = 142/200 (71%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGT 48593 |||||| || |||||||| || || | || || | ||||||||||||||||| || Sbjct 1761249 CTCCTTCTGGATGTTGTAGTC-GCTCAGGGTGCGGCCATCCTCCAGCTGCTTACCAGCGA 1761191 Query 48594 AAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAG 48653 | || || |||||||| ||| || | | ||||||||| || || ||||| | Sbjct 1761190 AGATCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACAT 1761131 Query 48654 ACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713 | ||||| |||| ||||||| ||| | || || || || || ||||| || || | Sbjct 1761130 TGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGA 1761071 Query 48714 CAAAAATCTGCATCGTGTCT 48733 | |||||||||||| || || Sbjct 1761070 CGAAAATCTGCATCTTGCCT 1761051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421250650662107