Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001835465.1_202016-10-24] 107 sequences; 45,820,083 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq84 82.4 8e-11 >seq84 Length=768240 Score = 82.4 bits (90), Expect = 8e-11 Identities = 140/198 (71%), Gaps = 25/198 (13%) Strand=Plus/Minus Query 120893 TAATATTTTCTTCAATTTTAGGAACAAATATATAAATTAATCCTCTACAAACAATATT-- 120950 || |||||| || ||||||| || ||||||||||||||| || || |||||| Sbjct 255001 TATTATTTTTTTTAATTTTAAAAATAAATATATAAATTAA-----TAATAATAATATTTA 254947 Query 120951 -----TTTACTTTCTAAAATGTAACAACTAGatattatttttaatatctttataaataat 121005 |||| ||| ||||| ||| || | ||||| |||||| || |||||||||||| Sbjct 254946 CTTTATTTAATTTAAAAAAT-TAAAAATAATATATTTTTTTTATTAATTTTATAAATAAT 254888 Query 121006 t-tttttaacatttaaatcattatggatattttaaatATGTTAA-AATTTTTAGAAAAAT 121063 | ||||||| ||||| ||| || ||| | ||||||| | ||||| ||| || Sbjct 254887 TATTTTTAA----TAAATAATT-----TA-ATTATAAATGTTAATTAATTTTATAAATAT 254838 Query 121064 CATCATTTTATAATTTTA 121081 || | || ||| ||||| Sbjct 254837 TATAACTTAATATTTTTA 254820 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531900088582680