Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001835465.1_202016-10-24] 107 sequences; 45,820,083 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq93 325 1e-83 >seq93 Length=305044 Score = 325 bits (360), Expect = 1e-83 Identities = 1066/1634 (65%), Gaps = 42/1634 (3%) Strand=Plus/Minus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||| |||||| | || || | | ||| ||||| || | | | ||| ||||||| Sbjct 225533 TTCACCCACGCCTCCCCCACCCTCTTCAACGCTGGTACCCCGCAGGCCCAGCTGTCTTCA 225474 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| | | | |||||||||||| ||| |||||||||| |||||| || |||| Sbjct 225473 TGCTTCTTGGTTGACATGAAGGACGATAGCATTGAGGGTATCTATGACACTCTGAAGACG 225414 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGT-ATCGATCCACAATGTTCGTGC 363725 ||||| | |||||||||| || ||||| || || | | || ||||| | ||||| Sbjct 225413 TGTGCCATGATTTCCAAGATGGCTGGCGGCATCGGCTTGAACG-TCCACCGCATCCGTGC 225355 Query 363726 -ACAGAACAGTTACATTCGCGGCACAGGGGGATACT-CGAATGGGCTGGTTCCCATGCTT 363783 || | ||||||| ||||| || |||| | || || | ||||||||||| Sbjct 225354 CACCGGTTC-TTACATTGCGGGCACCAACGG-TACTTCCAACGGTATCATTCCCATGCTT 225297 Query 363784 CGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCG 363843 || || || |||| ||||| || ||||||||||||||||| ||||| || || Sbjct 225296 CGAGTCTTCAACAACACTGCCAGATACGTCGACCAGGGTGGCAACAAGCGTCCTGGTGCC 225237 Query 363844 TTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAA 363903 ||||| || || || ||||| || || ||| | |||||||| ||||| ||||| || Sbjct 225236 TTTGCCATCTACCTGGAGCCATGGCACGCTGATGTCTTTGAGTTCCTTGATCTCCGCAAG 225177 Query 363904 AACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGAC 363963 ||| || || ||||| | ||||| || || | ||| ||| || ||| || | || Sbjct 225176 AACCACGGTAAGGAGGAGGTCCGTGCTCGCGACTTATTCCTTGCTCTCTGGATTCCCGAT 225117 Query 363964 CATTTTATGAAGCGCGTGGAGGCAGGTA--AGAATTGGTCACTCTTTTGCCCACACGAAT 364021 | || |||||||| || ||| | | | | | ||| | ||| | ||||| |||| | Sbjct 225116 CTCTTCATGAAGCGTGTTGAG--AAGAACTTGGACTGGACGCTCATGTGCCCCAACGAGT 225059 Query 364022 GTCCAGGTCTTTCCGA-TG-TATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGA 364079 | || || ||| | || || ||| || || || | | ||| | || || ||||| || Sbjct 225058 GCCCTGGCCTTGCTGACTGCTAT--GGCGAGGAGTTCGAGGCTTTGTATGAGAAGTACGA 225001 Query 364080 ATCGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGA 364139 ||||||| | ||| ||||| || | ||| |||||||| |||| | ||||| |||| Sbjct 225000 GAAGGAGGGACGTGGTCGCAAGACTATCCGCGCTCAGAAGCTGTGGTATTCCATCCTGGA 224941 Query 364140 TTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTC 364199 | |||| ||||| || | |||| ||| | ||||| || |||||||||||| Sbjct 224940 AGCCCAGACCGAGACTGGCAACCCCTTCATGCTCTACAAGGACCACTGCAACCGCAAGAG 224881 Query 364200 CAACCAGCAGCACCTTGGTACAATTCAGCAGAGC-AACCTATGTACCGAGATTATTGAAT 364258 ||||||| || |||| ||||| | || |||| | ||||| || || ||||||||||| | Sbjct 224880 CAACCAGAAGAACCTGGGTACCA-TCCGCAGCTCTAACCTCTGCACTGAGATTATTGAGT 224822 Query 364259 ACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTG 364318 || || || || ||| ||| || || ||| | || || | || || || || | || Sbjct 224821 ACTGTGCCCCTGATGAGGTTGCTGTCTGCAACTTGGCCTCTTTGGCCCTCCCTGCCTATG 224762 Query 364319 T------AAAAGATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTA 364372 | || || || | |||| || | ||| | || || ||| | | | Sbjct 224761 TCGACTACAACGAAGGGTGCTATGACTTTAAGAAGCTTCACGAAGTCACCAAGGTGGTTG 224702 Query 364373 CTTGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGT- 364431 | || || ||||| |||| || ||| | || || | | || ||| ||| Sbjct 224701 TCCGTAACCTGAACAAGATTATTGATGTGAACCACTACCCTGTCCAGGAGGCC---CGTA 224645 Query 364432 --TCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTA 364489 || |||||||| | || || ||| ||||||| ||||| || ||||| | ||| Sbjct 224644 ACAGCAACATGCGTCACAGACCTATCGGTGTTGGTGTCCAGGGTCTTGCTGATGCTTTCC 224585 Query 364490 TGATGCTCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTG 364549 | || ||| | ||||| || ||||| ||||| | || || ||| ||||||||| Sbjct 224584 TTGCCCTGCGCATGCCTTTTGAGTCTCCTGAGGCTCGCGAGCTGAACAAGCAGATCTTTG 224525 Query 364550 AAACAATGTATTTTGCCGCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGT 364609 | ||||| || || || | ||||| || | || || | |||| | Sbjct 224524 AGACAATCTACCACGCTGCCCTTGAGGCTTCTATGGAGATTGCCAAGGTCGAGGGCCCCT 224465 Query 364610 ACTCTACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATG 364669 || | | |||| || ||| || |||| | | || || || | ||| ||| Sbjct 224464 ACCAATCATTCAAGGGATCACCTGCATCTGAGGGCATCCTTCAATTCGACATGTGGGATG 224405 Query 364670 TCACGCCATCTGTCCGATGGAACTGGGATACGCT-ACGTTCCAACGTTAAGAAGCATGGT 364728 ||| ||| || | | ||| | ||||| | || | | | | | ||| |||| ||| Sbjct 224404 TCAAGCCCTCCGACTTGTGGGAGTGGGACTCTCTCAAGGAGC-AGATCAAGGAGCACGGT 224346 Query 364729 ACTCGCAA---CTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTC 364785 ||||| || |||||| || || ||||| || || ||| | |||||||| Sbjct 224345 GTGCGCAACAGCTTGCTCGTT---GCCCCTATGCCAACTGCCAGCACTTCCCAGATCCTG 224289 Query 364786 GGAAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCC 364845 || ||||| ||||||||||| || | || ||| | || ||||| || ||| || Sbjct 224288 GGCAACAATGAGTGCTTCGAGCCCTACACCTCCAACATCTACCAGCGCCGTGTCCTTGCC 224229 Query 364846 GGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGG 364905 || || || | ||| || || | || ||||||| || |||| || || ||| Sbjct 224228 GGCGAGTTCCAGGTTGTCAACCCTTGGCTTCTCAAGGACCTGGTCGACACTGGCCTCTGG 224169 Query 364906 GGTGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGA 364965 || |||||||||| ||| || || | || || || | |||||||| || Sbjct 224168 TCCGATGCCATGAAGAACCGTATTATTGCTGAGAACGGCTCCATTCAGAACATCCCCAAC 224109 Query 364966 TTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCG---AACT 365022 | || || ||| | ||| | | ||||| ||||| ||||| ||||| ||| || | Sbjct 224108 ATCCCCGAGGATATCAAGGCATTGTACAAGACCGTCTGGGAGATTTCTCAGCGCCAAATT 224049 Query 365023 CTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTA 365082 || | ||||||||||| || |||||||| || ||| |||||| | ||| | Sbjct 224048 GTC---CAGATGGCGGCCGACCGTGGTGCTTTCATTGACCAGTCCCAGTCCCTGAACATC 223992 Query 365083 TTCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCC 365142 ||||| | || || | |||| |||| |||||| ||| || ||||| Sbjct 223991 CACATGAAGGACCCCACAATGGGCAAGATTACCAGCATGCACTTCACTGGCTGGAAGCTT 223932 Query 365143 GGTCTTAAGACAGG 365156 ||||| ||||| || Sbjct 223931 GGTCTCAAGACCGG 223918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303351813183674