Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001835465.1_202016-10-24] 107 sequences; 45,820,083 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq93 188 7e-43 seq97 149 6e-31 seq1 134 1e-26 seq47 98.7 9e-16 >seq93 Length=305044 Score = 188 bits (208), Expect = 7e-43 Identities = 915/1436 (64%), Gaps = 27/1436 (2%) Strand=Plus/Plus Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117 ||||| ||||| ||||||||||| | ||||| ||| || | ||| || ||| |||| Sbjct 224209 TTGACAACCTGGAACTCGCCGGCAAGGACACGGCGCTGGTAGATGTTGGAGGTGTAGGGC 224268 Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177 || || |||| || ||||||||||| || | || | || || ||||| || || Sbjct 224269 TCGAAGCACTCATTGTTGCCCAGGATCTGGGAAGTGCTGGCAGTTGGCATAGGGGCAACG 224328 Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCAT 145237 | || ||||||| ||||||| |||||| | ||||| || | |||| ||||| Sbjct 224329 AGCAAGCTGTTGCGCACACCGTGCTCCTTGATCTGCTCCTTGAGAGAGTCCCACTCCCAC 224388 Query 145238 A--GCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTC-GCTGGCGGGG 145294 | || || ||| | || |||||||||||| | || | |||||||| | || || | Sbjct 224389 AAGTCGGAG--GGCTTGACATCCCACATGTCGAATTGAAGGATGCCCTCAGATGCAGGTG 224446 Query 145295 CTGCCTTGAAAGGAACTGTAACTGCCCCAAGTTTTGGCGAGCTCGCAACTCGCCTCCAGA 145354 | ||||| || || ||| |||| ||||| | ||| | ||||| || Sbjct 224447 ATCCCTTG-AATGATTGGTAGGGGCCCTCGACCTTGGCAATCTCCATAGAAGCCTCAAGG 224505 Query 145355 GCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCTCG 145414 || || || |||||||| || ||| |||| ||| || ||| ||| Sbjct 224506 GCAGCGTGGTAGATTGTCTCAAAGATCTGCTTGTTCAGCTCGCGAGCCTCAGGAGACTCA 224565 Query 145415 TACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGGC 145474 | ||||||||||| | |||||||| || || ||||| | || || ||||| || Sbjct 224566 AAAGGCATGCGCAGGGCAAGGAAAGCATCAGCAAGACCCTGGACACCAACACCGATAGGT 224625 Query 145475 CGATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATATCGATTACGGTCGATAATT 145534 | || ||||||||| | | ||| || || ||| || | || || ||||| Sbjct 224626 CTGTGACGCATGTTGCTGTTACGGGCCTCCTGGACAGGGTAGTGGTTCACATCAATAATC 224685 Query 145535 TTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTCAAACCGA 145594 || |||| ||| || || || ||||| || | | | | ||| | ||||||| | | Sbjct 224686 TTGTTCAGGTTACGGACAACCACCTTGGTGACTTCGTGAAGCTTCTTAAAGTCATAGCAC 224745 Query 145595 GCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAACTGCCGTC 145654 | |||| | | ||| || | || ||| | || ||||| || || || || | Sbjct 224746 CCTTCGTTGTAGTCGACATAGGCAGGGAGGGCCAAAGAGGCCAAGTTGCAGACAGCAACC 224805 Query 145655 TCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATT---GCTACATTTGATGGTT 145711 || || | | | | ||| | | ||||| | ||| | || ||| | |||||| Sbjct 224806 TCATCAGGGGCACAGTACTCAATAATCTCAGTGCAGAGGTTAGAGCTGC---GGATGGTA 224862 Query 145712 CCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCG 145771 ||||| || | ||| || || || | |||||| |||||||||||||||| | || | Sbjct 224863 CCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTAGAGCATGAAGGGGTTG 224922 Query 145772 CCAGTCTCCACCTGCGTCTCCACGATAAAACGGTGCAAGTCCTGCGCACGCACCTGCTGC 145831 |||||||| ||| | |||| ||| || || | ||| || || | || Sbjct 224923 CCAGTCTCGGTCTGGGCTTCCAGGATGGAATACCACAGCTTCTGAGCGCGGATAGTCTTG 224982 Query 145832 TGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGAACCGTAGCAA 145891 | || ||||| | ||||| ||| || | |||| ||| | || ||||| Sbjct 224983 CGACCACGTCCCTCCTTCTCGTACTTCTCATACAAAGCCTCGAACTCCTCGCCATAGCAG 225042 Query 145892 TCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTGGCGTTGACG 145951 || | ||||| || |||| |||||| ||||| |||| ||| | ||| | || Sbjct 225043 TCAGCAAGGCCAGGGCACTCGTTGGGGCACATGAGCGTCCAGTCCAAGTTCTTCTCAACA 225102 Query 145952 CGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGCGCGCTTTGCAATCC 146011 |||| ||| || | ||| || | ||| || || | |||||||| || | ||| Sbjct 225103 CGCTTCATGAAGAGATCGGGAATCCAGAGAGCAAGGAATAAGTCGCGAGCACGGACCTCC 225162 Query 146012 TCAGCACCCATGTT-TCGCTTCAAATTAAGCACACT-ATAGATGTCCGCGTGCCACGGTT 146069 || ||| ||| | || | || ||| | ||| | ||| || |||||||| || | Sbjct 225163 TCCTTACCGTGGTTCTTGC-GGAGATCAAGGA-ACTCAAAGACATCAGCGTGCCATGGCT 225220 Query 146070 CAATATAGACGGCGAGGGCTCCTTTTCG---TTTGCCACCCTGGTCCACGTGACGTACCA 146126 | | |||| ||| | ||| || || |||||||||||||| |||| | | Sbjct 225221 CCAGGTAGATGGCAAAGGCACCAGGACGCTTGTTGCCACCCTGGTCGACGTATCTGGCAG 225280 Query 146127 TGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACGCCGTTCGTAGAGTTTA 146186 ||||||| ||||| || | |||||| || ||| ||| ||||| || | Sbjct 225281 TGTTGTTGAAGACTCGAAGCATGGGAATGATACCGTTGGAAGTACCGTTGGTGCCCGCAA 225340 Query 146187 TTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGAGACCGCC-GCCGTACTTG 146245 | | ||| || || | || || || |||| ||||| ||||| ||| | |||| Sbjct 225341 TGTAAGAACCGGTGGCACGGATGCGGTGGACGTTCAAGCCGATGCCGCCAGCCAT-CTTG 225399 Query 146246 GATATAGCGGCGCA-GTCGCCGAGCGTCTCGTAGATGCCGTCAATGCTATCG--CTTCGA 146302 || || ||| || ||| | || || || ||||| || |||||||||||| |||| Sbjct 225400 GAAATCATGGCACACGTCTTC-AGAGTGTCATAGATACCCTCAATGCTATCGTCCTTC-- 225456 Query 146303 ATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGGCGTCCCCGCCGAGAACAACGTC 146362 ||| | | || ||||| || ||| ||| ||| ||| || || || ||| | || Sbjct 225457 ATGTCAACCAAGAAGCATGAAGACAGCTGGGCCTGCGGGGTACCAGCGTTGAAGAGGGTG 225516 Query 146363 GGGCTCGCGTGCGTAAACATTTTTCGGCTCATCATCCGATACGTTTCGATAGCGTCTTGA 146422 ||| ||||| || || | || | ||| | | || || || | | | | Sbjct 225517 GGGGAGGCGTGGGTGAAGAACTTGCTCGACATGAGGTGGTATGTCTCCAGGACACGCTCA 225576 Query 146423 ATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCATGTGTTGGGGCCGCTC 146478 |||||||| || ||||| | ||| || ||||| | |||||| || || ||||| Sbjct 225577 ATGTCGTCTCCCCAGATGCCAACAGCCACTCGCATAATCATGTGCTGTGGTCGCTC 225632 >seq97 Length=261666 Score = 149 bits (164), Expect = 6e-31 Identities = 354/523 (68%), Gaps = 23/523 (4%) Strand=Plus/Plus Query 46083 TATGCCGTGCGTGCGCAAGAAAACCGACTGGGCGATGAAGTGGATCAACAGCAGCACCGC 46142 ||| || ||| | |||||||| | |||||||| || ||||||||| | || | | | Sbjct 3537 TATCCCTTGCATTCGCAAGAAGGCTGACTGGGCCATCAAGTGGATCCAGGACAAGAACTC 3596 Query 46143 GACTTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAG 46202 | || || |||| |||| |||||||| || ||||| |||| || ||| Sbjct 3597 TTCCTTTGCTCAGCGCCTGGTTGCCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGCGC 3656 Query 46203 TTTTGCCGCCATCTTTTACATCAA-AACCAAGGGCATCATGCCCGGCCTGACGTTTAGCA 46261 ||||| ||||||| | |||| || | ||| | |||||||||||||||| ||| || Sbjct 3657 CTTTGCATCCATCTTCTGGCTCAAGAAGCGAGGTC-TCATGCCCGGCCTGACCTTTTCCA 3715 Query 46262 ACGAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACTATAACA 46321 ||||||| || || || |||||||| ||||| || |||||||| || || | || Sbjct 3716 ACGAGCTCATCTCTCGTGACGAGGGTCTGCACACCGACTTTGCCTG-----CCTGTTGCA 3770 Query 46322 CTCGCGTGCACGACAAGCTTGCGCCCGACACCGTGCTGA------GCATGTTCAAGGAGG 46375 ||| | | | | || | ||||| | || | | ||| ||| ||| || | Sbjct 3771 CTC-CCACCTCAAGAACC--GCGCCAG-CAAGGAGGTGATCCGTGACATCATCACCGATG 3826 Query 46376 CGGTGGCCATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGA 46435 | || |||||| | ||||| || || | || || ||| |||||||||||||||| Sbjct 3827 CTGTCCGAATTGAGCAAGAGTTCTTGACCGAGGCTCTCCCCTGCGCCCTGCTGGGCATGA 3886 Query 46436 ACGCACAGTCAATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCT-T 46494 || | | | ||| | |||||||||||||| || ||||| ||||| || ||| | Sbjct 3887 ACTCCAACTTGATGAAGCAGTACATCGAGTTTGTTGCTGACCGCCTGCT--TGTTGCTCT 3944 Query 46495 CACCAGC-CGAAGCATTTTCACG-CGCGCAATCCATTTGAGTTTATGAACAACATCTCCC 46552 | || | |||| || | || | | ||| || ||||| |||||| | ||||| || | Sbjct 3945 CGGCAACGAGAAG-ATCTACAAGTCTTCCAACCCCTTTGACTTTATGGAGAACATTTCTC 4003 Query 46553 TGGAGGGCAAAACTAATTTTTTCGAAAAGCGCGTCGGCGAGTA 46595 | | ||||| || || || || || ||||| || | ||| || Sbjct 4004 TTGGTGGCAAGACCAACTTCTTTGAGAAGCGTGTTGCCGACTA 4046 >seq1 Length=17084797 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||||| || | || | ||| |||||||| || |||||||| |||||| Sbjct 1761284 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTC 1761225 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| |||||||| || ||| |||| || |||||||||||||| || Sbjct 1761224 AGGGTGCGGCCATCCTCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGGA 1761165 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | || |||| ||||| | Sbjct 1761164 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 1761105 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | || || || || || || || |||||||||||||| Sbjct 1761104 TCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 1761058 Score = 120 bits (132), Expect = 3e-22 Identities = 144/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 131043 CTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTA 131102 |||||| ||||||||||| ||||||| ||||| |||||| ||||||||||| || | Sbjct 3412139 CTCCTTCTGAATGTTGTAGTCGCTCAAAGTGCGGCCGTCCTCAAGCTGCTTGCCAGCAAA 3412198 Query 131103 GATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTG-CTTGAGCT 131161 ||| | ||||||||| ||||| ||||| || || || || ||| | | || ||||| | Sbjct 3412199 GATAAGACGCTGCTGATCCGGGGGGATACCCTCCTTATC-CTGAATCTTTGACTTGACAT 3412257 Query 131162 GCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTA 131221 || | ||||| | ||||| | |||| ||| | || || || || || || || | Sbjct 3412258 TGTCGATGGTATCAGAAGACTCCACCTCGAGGGTGATAGTCTTGCCAGTCAGGGTCTTGA 3412317 Query 131222 CGAAAATCTGCAT 131234 ||||||||||||| Sbjct 3412318 CGAAAATCTGCAT 3412330 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || | || || || || || | || |||||| || |||||||| ||||| Sbjct 3411875 GCCACCACGAAGGCGAAGGACCAAGTGCAGTGTGCTCTCCTTCTGGATGTTGTAGTCGCT 3411934 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| ||| || |||||||| || ||| |||| || ||||||||||| ||||| Sbjct 3411935 CAAGGTGCGACCGTCTTCCAGCTGCTTACCAGCGAAGATCAAGCGCTGCTGGTCAGGAGG 3411994 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || || || ||||| ||| || ||||| | || | ||||| | ||||| | Sbjct 3411995 AATGCCCTCCTTGTCTTGGATCTTGGACTTGACGTTGTCGATGGTATCAGAAGACTCCAC 3412054 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | || || ||||| || || || || || || ||||| Sbjct 3412055 CTCGAGGGTGATAGTCTTGCCGGTCAGGGTCTTGACAAAGATTTGCAT 3412102 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || || || || || | || |||||||| || |||||||| ||| | Sbjct 3412618 CCACCACGAAGGCGGAGAACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAC 3412677 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || |||||| || |||||||| || |||| | |||||||||||| |||||| Sbjct 3412678 AGAGTTCGGCCGTCCTCGAGTTGCTTGCCAGCAAAGATAAGACGCTGCTGGTCAGGAGGG 3412737 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || || ||| | | || | || |||| ||||| | Sbjct 3412738 ATACCCTCCTTGTCCTGAATCTTGGACTTCACATTGTCGATGGTGTCGGATGACTCCACC 3412797 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGA 131236 || | ||| | || |||||||| || || || ||||| || ||||||| Sbjct 3412798 TCAAGGGTGATAGTCTTACCGGTCAGGGTCTTGACGAAGATTTGCATGA 3412846 Score = 98.7 bits (108), Expect = 9e-16 Identities = 152/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | || | || |||||||| ||||||||||| ||| Sbjct 3412332 CCACCACGAAGACGAAGGACAAGGTGGAGAGTAGACTCCTTCTGAATGTTGTAGTCGGAG 3412391 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || ||||| |||||||| || ||| |||| | ||||||||||| ||||| Sbjct 3412392 AGGGTTCGGCCATCCTCAAGCTGCTTACCAGCGAAGATGAGTCGCTGCTGGTCAGGAGGA 3412451 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||| | | || | ||||| | ||||| | Sbjct 3412452 ATGCCCTCCTTGTCCTGGATCTTGGACTTCACATTGTCGATGGTATCAGAAGACTCCACC 3412511 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 |||| ||| | ||| || ||||| || || || |||| Sbjct 3412512 TCGAGGGTGATGGTCTTTCCGGTGAGGGTCTTGACGA 3412548 >seq47 Length=144723 Score = 98.7 bits (108), Expect = 9e-16 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 |||| || |||||||| ||| || ||| || ||||| ||||||||||| || ||| Sbjct 138394 CCTTCTGGATGTTGTAGTCGGACAGGGTTCGGCCATCCTCGAGCTGCTTGCCAGCAAAGA 138453 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164 | || |||||||||||||| || || || || ||||| ||| || ||||| | | Sbjct 138454 TCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 138513 Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 | | || |||| |||||||| || | ||| | ||| || || || || || || |||| Sbjct 138514 CGATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGA 138573 Query 131225 AA 131226 || Sbjct 138574 AA 138575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472012168682880