Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001835465.1_202016-10-24] 107 sequences; 45,820,083 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq1 98.7 7e-16 seq97 96.9 2e-15 >seq1 Length=17084797 Score = 98.7 bits (108), Expect = 7e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||| | || | ||||| ||||||||||| ||||| ||||| || Sbjct 3412102 TACCACCACGGAGACGGAGGACAAGGTGAAGTGTGCTCTCCTTCTGAATGTTGTAGTCGC 3412161 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| || |||| || | || || || ||||| || || || || ||||| | || Sbjct 3412162 TCAAAGTGCGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGATCCGGGG 3412221 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| || || || ||| ||| ||| ||| ||||| | || ||||| | || | Sbjct 3412222 GGATACCCTCCTTATCCTGAATCTTTGACTTGACATTGTCGATGGTATCAGAAGACTCCA 3412281 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | || ||||| || || |||| ||| || ||||| |||||||| Sbjct 3412282 CCTCGAGGGTGATAGTCTTGCCAGTCAGGGTCTTGACGAAAATCTGCAT 3412330 >seq97 Length=261666 Score = 96.9 bits (106), Expect = 2e-15 Identities = 197/293 (67%), Gaps = 0/293 (0%) Strand=Plus/Minus Query 6195 GACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAAC 6254 || || |||||||||||||| ||| ||| || ||||| | || || ||||| ||| Sbjct 80221 GATGCCTTCTACCGCTACAAGATGGAACGCCTCCAGACCAAGATTGAAGGCAAGGGTAAC 80162 Query 6255 GGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCC 6314 ||||| || ||||| | |||||| || || ||||| | | || | ||||||| Sbjct 80161 GGTATCAAGACCGTTGTCGTCAACTTGTCTAGCGTCGCCCAATCTCTTGCCCGCCCTGGT 80102 Query 6315 ACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAA 6374 | || | || || || || | ||| || || |||||||| | | || | ||| Sbjct 80101 TCTTATGTCATCAAGTACTTTGGTTTCGAGCTGGGAGCTCAGACCAACATCGACCCCAAG 80042 Query 6375 AACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGAC 6434 |||| || | ||| ||||||| | || | | || ||||||||||| || || Sbjct 80041 GACGACCGTTGGATCATTAACGGCGCCCACGATGCCGCAAAGCTGCAGGATCACCTCGAT 79982 Query 6435 GGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGA 6487 ||||| || ||| ||||| || || | | ||| | ||||| |||||||| Sbjct 79981 GGCTTCATCAACAAATTTGTTCTCTGCAAGAAGTGCAAGAACCCCGAGACCGA 79929 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334946763207917