Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001835465.1_202016-10-24] 107 sequences; 45,820,083 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq97 181 1e-40 >seq97 Length=261666 Score = 181 bits (200), Expect = 1e-40 Identities = 487/733 (66%), Gaps = 25/733 (3%) Strand=Plus/Minus Query 92927 TCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGTACA 92986 ||||| ||||| || |||||||| |||||| | | ||||| || || || | || Sbjct 3926 TCAGCAACAAACTCGATGTACTGCTTCATCAAGTTGGAGTTCATGCCCAGCAGG-GCGCA 3868 Query 92987 GGT-AGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCT-- 93043 || ||||| ||||||||||| |||| ||| ||| || || || | | ||| || Sbjct 3867 GGGGAGAGCCTCGGTCAAGAACTCTTGCTCAATTCGGACAGCATCGGTGATGATGTCACG 3808 Query 93044 -ATTACTCTACTATTTGGTG--GTTTTTGTACGACATAATTGTACATTAAGCACGCAAAG 93100 || || || || ||| | ||| ||| | | || || | ||| |||||| Sbjct 3807 GATCAC-CTCCTTGCTGGCGCGGTTCTTG----AGGTGGGAGTGCAACAGGCAGGCAAAG 3753 Query 93101 TCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAAC 93160 ||||| || | ||| ||||| || || || | ||| ||| || || | || || | Sbjct 3752 TCGGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGGCCGGGCATG 3693 Query 93161 AGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCC 93220 || ||||| ||||||||||| || || || ||||| || || || ||||| || Sbjct 3692 AGACCTCGCTTCTTGAGCCAGAAGATGGATGCAAAGGCGCCGCTGAAGAAGATACCCTCG 3633 Query 93221 ACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTG--CT-GATCCAT 93277 ||||| ||||| || || | || | ||||| | || || || || |||||| Sbjct 3632 ACGGCAGCAAAGGCAACCAGGCGCTGAGCAAA---GGAAGAGTTCTTGTCCTGGATCCAC 3576 Query 93278 TTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGG 93337 || | ||||| || || || || ||| ||||| | || || || ||||| || || Sbjct 3575 TTGATGGCCCAGTCAGCCTTCTTGCGAATGCAAGGGATAGTCTCAATGGCGTTGAAGAGA 3516 Query 93338 TAATCTCGCTCGTCCGAATCTCGT--ATGTATGTATCGATTAACAGAGAATACATTTCAG 93395 || | |||| | | |||| | ||||| || ||||| | ||| || || | || | Sbjct 3515 TAGTTGCGCTGG--CTGTTCTCCTTGATGTAGGTGTCGATGAGCAGGGAGTAGGTCTCGG 3458 Query 93396 AATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCA 93455 | |||| |||||||| || ||||| |||||||| |||| ||| || | |||||| | Sbjct 3457 AGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGAGCCTCGGGGATCTGGA 3398 Query 93456 CTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaa 93515 | || || | ||| || || || || ||||| || ||||| || || ||||| | Sbjct 3397 CCTCGCCGCTGAAGCGCTCGACCAGGTTCTCGTTGACAATGCCATCAGAGGCGGCAAAGA 3338 Query 93516 aaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAA---GCTTATCCCAATCGG 93572 | |||| || || || || | ||||| ||||| || | | || | ||| ||| Sbjct 3337 AGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTCCAGTCGT 3278 Query 93573 ATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGT 93632 ||||| || || || || | |||||| | ||||| || || || || || || |||| Sbjct 3277 GCAGATCCTTGGACAGGTCAATCTCTTCGGCGGTCCAGAAGGAAGCCTCGGCCTTCTTGT 3218 Query 93633 ACATATCCCATAT 93645 |||| | ||| || Sbjct 3217 ACATTTGCCAGAT 3205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556860055198680