Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001835465.1_202016-10-24] 107 sequences; 45,820,083 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq1 118 9e-22 seq47 91.5 1e-13 >seq1 Length=17084797 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | |||||||| || |||| ||||| ||||| | || Sbjct 3412844 ATGCAAATCTTCGTCAAGACCCTGACCGGTAAGACTATCACCCTTGAGGTGGAGTCATCC 3412785 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || | || || ||||| |||||||||||||| || || || || Sbjct 3412784 GACACCATCGACAATGTGAAGTCCAAGATTCAGGACAAGGAGGGTATCCCTCCTGACCAG 3412725 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || |||||||| ||||| ||||| || | ||||| ||| || | ||||| |||||| Sbjct 3412724 CAGCGTCTTATCTTTGCTGGCAAGCAACTCGAGGACGGCCGAACTCTGTCCGACTACAAC 3412665 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || || || | || || ||| | || | || || ||| Sbjct 3412664 ATCCAGAAGGAGTCTACTCTCCACTTGGTTCTCCGCCTTCGTGGTGGT 3412617 Score = 114 bits (126), Expect = 1e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || || | || || || || |||| || || ||||| | | Sbjct 3412330 ATGCAGATTTTCGTCAAGACCCTGACTGGCAAGACTATCACCCTCGAGGTGGAGTCTTCT 3412271 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| || |||| ||| ||||| || ||||||||||| || || ||||| Sbjct 3412270 GATACCATCGACAATGTCAAGTCAAAGATTCAGGATAAGGAGGGTATCCCCCCGGATCAG 3412211 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || |||||||| ||||| ||||| ||| | ||||| |||||| | ||| |||||| Sbjct 3412210 CAGCGTCTTATCTTTGCTGGCAAGCAGCTTGAGGACGGCCGCACTTTGAGCGACTACAAC 3412151 Query 22399 ATTCAAAAAGA 22409 ||||| || || Sbjct 3412150 ATTCAGAAGGA 3412140 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| ||||| || || || | || || || ||| |||| ||||| ||||| | Sbjct 1761055 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 1761114 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 |||| ||| | ||| || |||| || || || ||||||||||| ||||| || || Sbjct 1761115 TCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGAC 1761174 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || || | || || || || || ||| | |||||| ||||||| | ||| ||| Sbjct 1761175 CAGCAGCGATTGATCTTCGCTGGTAAGCAGCTGGAGGATGGCCGCACCCTGAGCGACTAC 1761234 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || || || || ||| | || | || |||| |||| || ||| Sbjct 1761235 AACATCCAGAAGGAGTCTACCCTCCACCTGGTCCTGCGCCTGCGTGGTGGT 1761285 Score = 96.9 bits (106), Expect = 3e-15 Identities = 125/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 ||||| || || |||| || || ||||| | | |||||| | ||| || | || Sbjct 3412534 ACCGGAAAGACCATCACCCTCGAGGTGGAGTCTTCTGATACCATCGACAATGTGAAGTCC 3412475 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || ||||||||||| ||||| || || || || || || || || || || || Sbjct 3412474 AAGATCCAGGACAAGGAGGGCATTCCTCCTGACCAGCAGCGACTCATCTTCGCTGGTAAG 3412415 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415 ||| | |||||| ||| ||| ||||||| ||||||||||| || || || || Sbjct 3412414 CAGCTTGAGGATGGCCGAACCCTCTCCGACTACAACATTCAGAAGGAGTCTAC 3412362 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || || | ||||| || || |||| || || ||||| | | Sbjct 3412102 ATGCAAATCTTTGTCAAGACCCTGACCGGCAAGACTATCACCCTCGAGGTGGAGTCTTCT 3412043 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| | |||| || || |||||||||||||| ||||| || || || Sbjct 3412042 GATACCATCGACAACGTCAAGTCCAAGATCCAAGACAAGGAGGGCATTCCTCCTGACCAG 3411983 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || || || || || ||| | || || |||||| | ||| |||||| Sbjct 3411982 CAGCGCTTGATCTTCGCTGGTAAGCAGCTGGAAGACGGTCGCACCTTGAGCGACTACAAC 3411923 Query 22399 ATTCAAAAAGA 22409 || || || || Sbjct 3411922 ATCCAGAAGGA 3411912 >seq47 Length=144723 Score = 91.5 bits (100), Expect = 1e-13 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 22227 TTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGT 22286 ||| || || || | || || || || |||| ||||| || || || |||| || | Sbjct 138575 TTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACGAT 138516 Query 22287 GGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCT 22346 ||| || |||| || || || ||||||||||| ||||| || || || || || | Sbjct 138515 CGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGATT 138456 Query 22347 TATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406 || ||||| ||||| ||| | |||||| ||| ||| | ||||| |||||||| || || Sbjct 138455 GATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGAACCCTGTCCGACTACAACATCCAGAA 138396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727452648455