Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001835465.1_202016-10-24] 107 sequences; 45,820,083 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq97 105 1e-17 seq46 104 5e-17 >seq97 Length=261666 Score = 105 bits (116), Expect = 1e-17 Identities = 350/541 (65%), Gaps = 15/541 (3%) Strand=Plus/Minus Query 251844 GTGCAGACCCTCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCC 251903 ||||||||||||||| ||| ||||| ||||||||| | |||||| ||||| | || Sbjct 3747 GTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGGCCGGGCATGAGACC 3688 Query 251904 ACGGTTCCTGAGCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACA 251963 || ||| ||||||||||||| | ||||| || ||| | | ||||||||| Sbjct 3687 TCGCTTCTTGAGCCAGAAGATGGATGCAAAGGCGCCGCTGAAGAAGATACCCTCGACGGC 3628 Query 251964 CACCCATGCAACAAGGCGCTCAGCAAACGA------CTTGTCCTGCGACAAGAACTTCTG 252017 | | ||||| ||||||| |||||| || ||||||||| | |||| Sbjct 3627 AGCAAAGGCAACCAGGCGCTGAGCAAAGGAAGAGTTCTTGTCCTG---GATCCACTTGAT 3571 Query 252018 TGCCCATGCTGCCTTCTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTT 252077 ||||| | |||||||| | || ||||| || || || || | |||||| |||| Sbjct 3570 GGCCCAGTCAGCCTTCTTGCGAATGCAAGGGATAGTCTCAATGGCGTTGAAGAGATAGTT 3511 Query 252078 CCGCTCGGCATCGTCCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGAT 252137 |||| | | |||| |||| | || | || || ||||| |||| || ||||| Sbjct 3510 GCGCTGGCTGTTCTCCTTGATGTAGGTGTCGATGAGCAGGGAGTAGGTCTCGGAGTGGAT 3451 Query 252138 GGATTCGTTGAACATCTGGTAAGCATAGA---ATAGACGCGCGGAAGGGTCGGTGACTTC 252194 | || | | |||||| | | |||| || || | ||| || || | ||| || Sbjct 3450 GTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGAGCCTCGG--GGATCTG-GACCTC 3394 Query 252195 CGTGGAAAAGTTGTTTGCAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCC 252254 | ||| | | | |||||| | || |||||||| | | ||||||||| | Sbjct 3393 GCCGCTGAAGCGCTCGACCAGGTTCTCGTTGACAATGCCATCAGAGGCGGCAAAGAAGGC 3334 Query 252255 AAGAATGGTCTTGATGAAGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAAT 252314 || ||| |||||||| ||| || ||||| || || ||||||| | Sbjct 3333 CAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTCCAGTCGTGCAG 3274 Query 252315 GTCCTGATTCAGAGGAACTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACAT 252374 |||| ||| || ||||| | |||||||| | | | | |||||||||||||| Sbjct 3273 ATCCTTGGACAGGTCAATCTCTTCGGCGGTCCAGAAGGAAGCCTCGGCCTTCTTGTACAT 3214 Query 252375 T 252375 | Sbjct 3213 T 3213 >seq46 Length=153360 Score = 104 bits (114), Expect = 5e-17 Identities = 160/226 (71%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 |||||||| || || |||| |||||| || || || |||| ||||||||||| ||| Sbjct 131978 GGTGAGGACCTTTGCAACTGCACTTTCTCTCTTGCCTACGGTGCCAAGATTCTGCTCAAC 131919 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 |||| |||| | |||||||||| | || || ||||| ||||||||| || | Sbjct 131918 CAGACCCACCTCCGCCTCAAGCGTGGTCAGCGTTACGGTCTTTGCGGTCCCAACGGTTCC 131859 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 || ||| ||||| ||||| ||||| |||| ||| | | ||| ||||| | ||| Sbjct 131858 GGCAAGTCTACTCTCATGCGTGCCATCAACAACGAGCAGGTCG-AGGGTTTCCCCAAGCA 131800 Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTCCTCT 279569 ||||| | ||| || | || ||||||||| | |||||| || Sbjct 131799 GAGCGAGGTCAAGACCGTCTTCGTCGAGCACGACCTTGACTCCGCT 131754 Score = 93.3 bits (102), Expect = 9e-14 Identities = 105/138 (76%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 280702 CTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCA- 280760 ||||||| || || || ||||| ||||| |||||| ||||| |||| | | || Sbjct 130576 CTCACTCCCGTATGCGTGGTCTGTCTGGTGGCCAGCGTGTCAAGACTGTCCTGGCTGCTT 130517 Query 280761 GCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGC 280820 ||||| ||||| | || ||| ||||||| || ||||||||||||||||||||||| || Sbjct 130516 GCTCT-TGGCAGCGACCCCACTTGATCGTCCTTGACGAGCCTACCAACTATCTGGATCGT 130458 Query 280821 GAGAGCCTGGGCGCTCTG 280838 || ||||| |||||| Sbjct 130457 GACTCTCTGGGTGCTCTG 130440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027835390899987