Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001835465.1_202016-10-24] 107 sequences; 45,820,083 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq97 197 3e-45 seq1 167 4e-36 seq46 125 1e-23 >seq97 Length=261666 Score = 197 bits (218), Expect = 3e-45 Identities = 570/865 (66%), Gaps = 19/865 (2%) Strand=Plus/Minus Query 9933 TTCATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCC 9992 |||||||| || ||||||||||| || | || || ||| |||||||||| |||||| Sbjct 4067 TTCATGACACCGGCCTTCTGGTAGTCGGCAACACGCTTCTCAAAGAAGTTGGTCTTGCCA 4008 Query 9993 TCGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAA 10052 | || |||||| |||||| |||||||||||||| | | ||| || Sbjct 4007 CCAAGAGAAATGTTCTCCATAAAGTCAAAGGGGTTGGAAGACTTGTAGATCTTCTCGTTG 3948 Query 10053 CCGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAG 10112 ||||| || | | ||||||||| || |||||||||||||| |||||| || ||| Sbjct 3947 CCGAGAGCAACAAGCAGGCGGTCAGCAACAAACTCGATGTACTGCTTCATCAAGTTGGAG 3888 Query 10113 TTCATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACC 10172 |||||||| | || | |||||||| || ||| | ||| || | || | ||| Sbjct 3887 TTCATGCCCAGCAGGGCGCAGGGGAGAGCCTCGGTCAAGAACTCTTGCTCAATTCGGACA 3828 Query 10173 GCTTCCTCGACGATGCTCTTTACCACGTCAAGG--GACAGCTTGTTCTCGAGCTTCGAAT 10230 || || || |||| | ||| || | | | || ||||| ||| | || | Sbjct 3827 GCATCGGTGATGATGTCACGGATCACCTCCTTGCTGGC-GCG-GTTCTTGAGGTGGGAGT 3770 Query 10231 ACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACA 10290 || || |||| | ||| || |||||||| || ||||| ||||||||| | Sbjct 3769 GCAACAGGCAGGCAAAGTCGGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAA 3710 Query 10291 AACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGC-GCAGAACGACCCG 10349 | ||| ||||||||||| || || || |||||||| |||| ||| || | ||| Sbjct 3709 AGGTCAGGCCGGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGATGCA-AAGGCGCCG 3651 Query 10350 GAGAACAGAAGACCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAAGGA-GCGGTC 10408 ||| | | |||||| ||| | |||| || ||||||| || ||||| | | || Sbjct 3650 CTGAAGAAGATACCCTCGACGGCAGCAAAGGCAACCAGGCGCTGAGCAAAGGAAGAGTTC 3591 Query 10409 GCG--CGAAAAGTATTTCGAGGCCCACGCTGCCTTCTTTCCCACGGCAGGGATCGTCTCG 10466 | | | | || |||||| | |||||||| | | | |||||| ||||| Sbjct 3590 TTGTCCTGGATCCACTTGATGGCCCAGTCAGCCTTCTTGCGAATGCAAGGGATAGTCTCA 3531 Query 10467 ATAGCCTCGAAGAGCTTGTTACGCTCGGTCTCGTCCTCAATAAGAGCATCAAGGAGCAGG 10526 || || | |||||| | ||| |||| | | | |||| || | || | ||||||| Sbjct 3530 ATGGCGTTGAAGAGATAGTTGCGCTGGCTGTTCTCCTTGATGTAGGTGTCGATGAGCAGG 3471 Query 10527 GAGTATTGCTCGCTGTGGACGCTCTCATTGTACCCCTGGTAAGCGTAGAA-CATACGTGC 10585 ||||| |||| ||||| | |||| | |||| | ||||||| ||| || || Sbjct 3470 GAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAT-CGAGC 3412 Query 10586 CGAGGGGTCCGTGACTTCCTCGGCAAAGTTGTTGTTCAGGTTCTCCATCACCATGCCATC 10645 | |||| | ||| || || ||| | | ||||||||| | || |||||||| Sbjct 3411 CTCGGGGATCTGGACCTCGCCGCTGAAGCGCTCGACCAGGTTCTCGTTGACAATGCCATC 3352 Query 10646 GCTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAAGTGGCGCTCATCATCGTTCAG--- 10702 | | ||||||||| | |||||||| |||||||| ||| ||||||||||| Sbjct 3351 AGAGGCGGCAAAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCG 3292 Query 10703 -TTTTTCACGCCAGTCTACCACATCCTGGTTGAGCTGGACCTCCTCCACGGTCCAGAAAG 10761 || ||| ||||| || ||||| | || | | ||| || |||||||||| | Sbjct 3291 GTTGTTC----CAGTCGTGCAGATCCTTGGACAGGTCAATCTCTTCGGCGGTCCAGAAGG 3236 Query 10762 TGGCAACGGCCTTCTTGTACATCTG 10786 || |||||||||||||||| || Sbjct 3235 AAGCCTCGGCCTTCTTGTACATTTG 3211 >seq1 Length=17084797 Score = 167 bits (184), Expect = 4e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||||| |||| ||| || || ||||| || |||||||| || ||| Sbjct 1761284 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTC 1761225 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || ||||| || | || || ||||| || ||| Sbjct 1761224 AGGGTGCGGCCATCCTCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGGA 1761165 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | |||||| ||||||||||| | || || || Sbjct 1761164 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 1761105 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||| || || |||||||||||||||||||| |||||||| Sbjct 1761104 TCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 1761058 Score = 158 bits (174), Expect = 2e-33 Identities = 165/217 (76%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | || | ||| || || ||||| || || ||||| || |||||| Sbjct 3412332 CCACCACGAAGACGAAGGACAAGGTGGAGAGTAGACTCCTTCTGAATGTTGTAGTCGGAG 3412391 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || ||||| ||||||| || ||||| || ||| Sbjct 3412392 AGGGTTCGGCCATCCTCAAGCTGCTTACCAGCGAAGATGAGTCGCTGCTGGTCAGGAGGA 3412451 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | ||| || |||||||| || | || || || Sbjct 3412452 ATGCCCTCCTTGTCCTGGATCTTGGACTTCACATTGTCGATGGTATCAGAAGACTCCACC 3412511 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGA 68451 || | ||||||||| ||||| |||||||||||||||| Sbjct 3412512 TCGAGGGTGATGGTCTTTCCGGTGAGGGTCTTGACGA 3412548 Score = 150 bits (166), Expect = 3e-31 Identities = 172/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || |||||||| | |||||||| || || ||||| || |||||||| || ||||| Sbjct 3412618 CCACCACGAAGGCGGAGAACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAC 3412677 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | ||||| || || || || || | || ||||| || || Sbjct 3412678 AGAGTTCGGCCGTCCTCGAGTTGCTTGCCAGCAAAGATAAGACGCTGCTGGTCAGGAGGG 3412737 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| |||||||| | ||| || ||||||||||| | ||| || || Sbjct 3412738 ATACCCTCCTTGTCCTGAATCTTGGACTTCACATTGTCGATGGTGTCGGATGACTCCACC 3412797 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 || | |||||| || || || || |||||||||||||| || ||||| ||| Sbjct 3412798 TCAAGGGTGATAGTCTTACCGGTCAGGGTCTTGACGAAGATTTGCATGATG 3412848 Score = 145 bits (160), Expect = 1e-29 Identities = 173/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 68227 TTTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTAT 68286 |||| | || || |||||||| | |||||||| || ||| ||| || |||||||| | Sbjct 3411868 TTTACTGGCCACCACGAAGGCGAAGGACCAAGTGCAGTGTGCTCTCCTTCTGGATGTTGT 3411927 Query 68287 AATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGT 68346 | ||| | || | || ||||| | |||||| || ||||| || | | || |||| Sbjct 3411928 AGTCGCTCAAGGTGCGACCGTCTTCCAGCTGCTTACCAGCGAAGATCAAGCGCTGCTGGT 3411987 Query 68347 CGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTG 68406 | || |||||||| ||||||||||| ||||| | ||||||| |||||||| || | | Sbjct 3411988 CAGGAGGAATGCCCTCCTTGTCTTGGATCTTGGACTTGACGTTGTCGATGGTATCAGAAG 3412047 Query 68407 ATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | || || || | |||||| || || || || ||||||||||| || || ||||| Sbjct 3412048 ACTCCACCTCGAGGGTGATAGTCTTGCCGGTCAGGGTCTTGACAAAGATTTGCAT 3412102 Score = 107 bits (118), Expect = 4e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | || | ||| || ||| ||| || || ||||| || ||| Sbjct 3412104 CCACCACGGAGACGGAGGACAAGGTGAAGTGTGCTCTCCTTCTGAATGTTGTAGTCGCTC 3412163 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | || || || | |||||| || || || || || | || || || || || Sbjct 3412164 AAAGTGCGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGATCCGGGGGG 3412223 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||| || |||||||||| |||||| |||||||| || | || || || Sbjct 3412224 ATACCCTCCTTATCCTGAATCTTTGACTTGACATTGTCGATGGTATCAGAAGACTCCACC 3412283 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||| || || || || |||||||||||||| |||||||| Sbjct 3412284 TCGAGGGTGATAGTCTTGCCAGTCAGGGTCTTGACGAAAATCTGCAT 3412330 >seq46 Length=153360 Score = 125 bits (138), Expect = 1e-23 Identities = 673/1054 (64%), Gaps = 76/1054 (7%) Strand=Plus/Plus Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040 |||||||||||||||| | || ||| |||| |||||||| ||||| ||| || || Sbjct 130969 CGCCACTGGATGTACTCGGAAGGAGTCTTGTCAAGGTGGTTATCAATGTGGGCAAAGGCG 131028 Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACA-CAGAGCCCCGAGTCGG 225099 ||||| | ||| || || || ||||| |||| | | | | | ||| || Sbjct 131029 TGCTGCTTGATGTAGGCGATACGGATGTTCTCGTGCTGGTAGATCTCACCACCGGTGGGG 131088 Query 225100 TTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAAT 225159 || || || ||| ||| || ||||| || |||| |||||| ||||| ||||| ||||| Sbjct 131089 ATGAGC-TCACCGCAGAGAACGTTGATCAGAGTAGACTTGCCAGCACCGTTGGGACCAAT 131147 Query 225160 CACGCCAATCCGGGATGACATTGCAACCTGCGAGTTCACGTTG-----CTGAAGATCTCA 225214 ||| |||| || || || | ||| || | | || | |||| | | | Sbjct 131148 GACGGCAATACGAGAGCCCAGAGAGCACTGGAAGCTGATGTCGGTGATCTGAGGCTTGGA 131207 Query 225215 GGGCCAGTTTGGTAAGCAAAGGCCAC------GCCACGCAGCTTCATGATGGCACGGTCC 225268 || | | |||| |||| || | ||||||| ||| || | || Sbjct 131208 GGTACCGG--GGTACTGGAAGGACATCTTGGTGGCACGCAG------GATAGCCTTGGCC 131259 Query 225269 TTGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGTCC 225328 |||| | | |||||| ||||| |||||||||||||| ||| || | | | | Sbjct 131260 TTGGTCTTGACACCCTCAAGGAAACCGGGCTCGGGGAAGGTGAACTCCATCTCGGAGGCA 131319 Query 225329 TTCAGGTCGTAGTAAGATGCAGCCTCGGGT---CGCTTTGCCACGAAAGCAGACAGGTTT 225385 || |||||||| || || || ||||| ||||| | |||||| Sbjct 131320 CCGAGCTCGTAGTAGGACTTGGCGGAAGGAACACGCTTG---ACGAACTCCTTCAGGTTA 131376 Query 225386 CCGAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAAT-TGCCGAGCACACTGC 225444 || ||| | ||||||||| || |||||| ||||| || ||| | ||| || Sbjct 131377 CCACGGTAACGCTTGAGCTTGAA--TCG-CTCGTAGTGAACGATGTGCTG-GCAGACGTT 131432 Query 225445 GTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACGA-CACGTTCGTCAGGCCCTTGA 225503 ||| ||||||||||||||||| || ||||||||||| | || | | ||| | || Sbjct 131433 GTCGAGGAAGCCAGAGTCGTGAGAGACAATGATGGAAGTGCAGG---GGGAGGTGGT-GA 131488 Query 225504 GGTGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAA 225563 ||| | |||||| ||||| | ||||||| |||||| ||||| ||||| |||| Sbjct 131489 GGTACTCCTCGAGCCACTTGACGTTCTTCACGTCCAAGTGGTTAGTAGGCTCGTCGAGAA 131548 Query 225564 GCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCC 225623 ||||||| || | | || || || || |||| |||||||| ||||| || | Sbjct 131549 GCAGGATATCGGGGGCCTCGAAGACAGCACGGCACAGAGCAAGCTTCATCTTCCAACCAC 131608 Query 225624 CGGACAGGGAGCCGATTGAAACAGAGTGCTT----AGCT--TCGTCAAAGCCGTACTC-- 225675 ||||||| | | |||| | ||| | || ||| |||||| |||| Sbjct 131609 CGGACAGAGCG------GAAATCTCGCCCTTGACCATCTGCTCGGTGAAGCCGAACTCAT 131662 Query 225676 -CAGGAGCGTCTGGATAATGCGCTCGGGAGAGCTGCGAGCGGCAACGTTGGGGTCGGACG 225734 ||| || ||| || | || |||| || || | || |||| ||| | Sbjct 131663 CCAGACGCTTCTCGACATCAGCCT-----GAGC---GA-CGTCGACCTTGGCCTCGC-CA 131712 Query 225735 AGAGGTAATCAT-----ATACG------GTCATGTCCGAGACAGACGCGTCAATGTCGTG 225783 || | |||| | || ||||| || | ||| | ||||| |||||| Sbjct 131713 AGCT-TCTTCATGGTCCAGTCGATGGTAGTCATCTCAGTATCAGCGGAGTCAAGGTCGTG 131771 Query 225784 GTCCACGTACACCGTCCGGAGCT-GAGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTTG 225842 || ||| | || ||| || || | || | |||||| ||||| | ||| | || Sbjct 131772 CTCGACGAAGACGGTCTTGACCTCGCTCTGCTT-GGGGAAACCCTCGACCTGCTCGTTGT 131830 Query 225843 CAATCGCACGGAGCAGGGTACTCTTGCCCGCGCCGTTGGGACCGATGAGGCCGTAATGAT 225902 || ||||| | || ||| |||||| | |||||||||||| || |||||| | | Sbjct 131831 TGATGGCACGCATGAGAGTAGACTTGCCGGAACCGTTGGGACCGCAAAGACCGTAACGCT 131890 Query 225903 TCCCGCGCTTGATGTTGAGGCGCGTGGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGG 225962 || ||||||| | |||| | || ||| || || |||||| |||| |||||||| | Sbjct 131891 GACCACGCTTGAGGCGGAGGTGGGTCTGGTTGAGCAGAATCTTGGCACCGTAGGCAAGAG 131950 Query 225963 AGAACTCGCAATCGCACAGGTCCTCACCCTCCTC 225996 |||| ||| | ||| ||||||||||||||||| Sbjct 131951 AGAAAGTGCAGTTGCAAAGGTCCTCACCCTCCTC 131984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921621167330040