Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001835465.1_202016-10-24] 107 sequences; 45,820,083 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq97 412 7e-110 seq93 379 4e-100 >seq97 Length=261666 Score = 412 bits (456), Expect = 7e-110 Identities = 616/861 (72%), Gaps = 30/861 (3%) Strand=Plus/Plus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| |||||||||||||| || ||| |||||||||||| |||||||||||| Sbjct 3205 ATCTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACCGCCGAAGAGATTGACCTG 3264 Query 42360 GCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGA--GA--ACGAAAAGTTTTTCCTCAA 42415 ||||||| | || |||| | || | |||| || |||| |||| ||| || Sbjct 3265 TCCAAGGATCTGCACGACTGGAACA-ACCGCCTGAACGATGACGAGAAGTACTTCATCTC 3323 Query 42416 AAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAG 42475 |||| ||||||||||| ||||||||||| ||||| ||||| |||||||||| | | Sbjct 3324 TCACATCCTGGCCTTCTTTGCCGCCTCTGATGGCATTGTCAACGAGAACCTGGTCGAGCG 3383 Query 42476 GTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCAT 42535 |||| ||||| ||| | ||||| || |||||||||||||||||||| || Sbjct 3384 CTTCAGCGGCGAGGTCCAGATCCCCGAGGCTCGATGCTTCTACGGCTTCCAGATCATGAT 3443 Query 42536 AGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCC 42592 |||||| | ||||| ||| ||| || ||||||| |||| |||||| ||| Sbjct 3444 GGAGAACATCCACTCCGAGACCTACTCC---CTGCTCATCGACACCTACATCAAGGAGAA 3500 Query 42593 CGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGC 42652 | | |||| ||| || ||||| ||||| ||||| || || ||||| |||||||| Sbjct 3501 CAGCCAGCGCAACTATCTCTTCAACGCCATTGAGACTATCCCTTGCATTCGCAAGAAGGC 3560 Query 42653 GGACTGGGCGCTCAACTGGATCGAGAGTCCCG-ACGCAACGTTCGGCGAGAGGCTGGTAG 42711 |||||||| |||| |||||| || | | | || | | || | || | ||||| | Sbjct 3561 TGACTGGGCCATCAAGTGGATCCAG-GACAAGAACTCTTCCTTTGCTCAGCGCCTGGTTG 3619 Query 42712 CCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCA 42771 ||||| | ||||||||||| ||||||||| |||||||| || |||||||||||||||| Sbjct 3620 CCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGCGCCTTTGCATCCATCTTCTGGCTCA 3679 Query 42772 AGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAG 42830 || || |||| || |||||||| || ||||| || ||||| |||||| | |||||| Sbjct 3680 AGAAGCGAGGTCTC-ATGCCCGGCCTGACCTTTTCCAACGAGCTCATCTCTCGTGACGAG 3738 Query 42831 GGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCG 42890 || ||||| | |||||||||||||| || ||| |||||||| | || || Sbjct 3739 GGTCTGCACACCGACTTTGCCTGCCTGTTGCACTC---CCACCTCAAGAACCGCGCCAGC 3795 Query 42891 AAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACG 42950 |||||| | |||| | ||||||||| || || || || ||| | |||||| | || Sbjct 3796 AAGGAGGTGATCCGTGACATCATCACCGATGCTGTCCGAATTGAGCAAGAGTTCTTGACC 3855 Query 42951 CAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAG 43010 || | || ||| ||||| | ||||||||| | || | ||| |||||||| || Sbjct 3856 GAGGCTCTCCCCTGCGCCCTGCTGGGCATGAACTCCAACTTGATGAAGCAGTACATCGAG 3915 Query 43011 TACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGC--CG----CCTCTACAACACG 43064 | || || |||| || || || | | |||| || || ||||||| | Sbjct 3916 TTTGTTGCTGACCGCCTGCT-TG-----TTGCTCTCGGCAACGAGAAGATCTACAAGTCT 3969 Query 43065 CCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAG 43124 | |||||| ||||||||||||||||| || | | |||||||||||||| || ||| Sbjct 3970 TCCAACCCCTTTGACTTTATGGAGAACATTTCTCTTGGTGGCAAGACCAACTTCTTTGAG 4029 Query 43125 AAGCGCGTCGCCGACTACCAG 43145 ||||| || |||||||||||| Sbjct 4030 AAGCGTGTTGCCGACTACCAG 4050 >seq93 Length=305044 Score = 379 bits (420), Expect = 4e-100 Identities = 1128/1731 (65%), Gaps = 49/1731 (3%) Strand=Plus/Plus Query 243726 CTTCGGGAGCCACGCTGAACTGGACGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTACA 243785 |||| || | ||| ||||||||| |||||| | ||||||| ||| | || ||||||| Sbjct 223856 CTTCCTGATCAACGGTGAACTGGATGGGTGCAGCTGCGGCCTGGGTACGAAGATAGTACA 223915 Query 243786 TGCCGGTCTTGAGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCT 243845 ||||||||||||| ||| |||| | || ||||||| || | ||| ||| Sbjct 223916 TGCCGGTCTTGAGACCAAGCTTCCAGCCAGTGAAGTGCATGCTGGTAATCTTGCCCAT-- 223973 Query 243846 TGAGCTTTGGGTCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGG 243905 | |||| ||||| || || ||| ||||||||| |||||| | ||| | Sbjct 223974 -----TGTGGG--GTCCTT---CATGTGGATGTTCAGGGACTGGGACTGGTCAATGAAAG 224023 Query 243906 GCGCCCGCTCTGCGGCCATGGTGATGAGGTCCTTCTGAGATATCTCATACGCCGTCTTGT 243965 | || || || ||||| || | | |||||| ||||| | | ||||||| Sbjct 224024 CACCACGGTCGGCCGCCATCTGGACAATTTGGCGCTGAGAAATCTCCCAGACGGTCTTGT 224083 Query 243966 AGATGGGCTTGAGGTGCTCGGGGAACCCTTCGATGTTCTGCACCGAGCCCTTGTGGACGA 244025 | | | ||||| | |||||||| ||||||||| | ||||| || | | | Sbjct 224084 ACAATGCCTTGATATCCTCGGGGATGTTGGGGATGTTCTGAATGGAGCCGTTCTCAGCAA 224143 Query 244026 TGAGCTGGGTGCGCATGTTATCGTTCCACAGGCCCAAGCGCTCCAGCGCCTCGACCAGGT 244085 | | || | |||| |||| ||| ||||| | |||| ||| || || Sbjct 224144 TAATACGGTTCTTCATGGCATCGGACCAGAGGCCAGTGTCGACCAGGTCCTTGAGAAGCC 224203 Query 244086 GCCTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGA 244145 ||| || ||||| ||||| || | || || ||||||||||||| |||| | || Sbjct 224204 AAGGGTTGACAACCTGGAACTCGCCGGCAAGGACACGGCGCTGGTAGATGTTGGAGGTGT 224263 Query 244146 GCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCG 244205 ||||||| || ||| |||||||||| ||||| | ||||| ||||| ||||| || | Sbjct 224264 AGGGCTCGAAGCACTCATTGTTGCCCAGGATCTGGGAAGTGCTGGCAGTTGGCATAGGGG 224323 Query 244206 ACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGT 244265 || |||| ||||| | ||| |||||| || ||| | |||| || ||| | Sbjct 224324 CAACGAGCAAGCTGTTGCGCACACCGTGCTCCTTGATCTGCTCCTTGAGAGAGTCCCACT 224383 Query 244266 CCCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCT 244325 |||||| | | ||| | | ||| |||||||||| || || || | |||| Sbjct 224384 CCCACAAGTCGGAGGGCT---------TGACATCCCACATGTCGAATTGAAGGATGCCCT 224434 Query 244326 T-GCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTT-ACA 244383 | || || | | |||| | | | ||||||| || ||| || ||| | || | | Sbjct 224435 CAGATGCAGGTGAT-CCCTTGAATGATTGGTAGGGGCCCTCGACCTTGGCAATCTCCATA 224493 Query 244384 GCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGC 244443 | | || ||||| |||| |||||| ||||| |||||| |||||||| ||||| || Sbjct 224494 GAAGCC-TCAAGGGCAGCGTGGTAGATTGTCTCAAAGATCTGCTTGTTCAGCTCGCGAGC 224552 Query 244444 CTTGCCGCAGGTGA-----AGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGC 244498 || |||| || | || |||| || | ||| | || || || ||||| Sbjct 224553 CT-----CAGGAGACTCAAAAGGCATGCGCAGGGCAAGGAAAGCATCAGCAAGACCCTGG 224607 Query 244499 ACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAA 244558 || || | ||||| |||||||| ||| ||||| | ||| || | || ||||| Sbjct 224608 ACACCAACACCGATAGGTCTGTGACGCATGTTGCTGTTACGGGCCTCCTGGACAGGGTAG 224667 Query 244559 AAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGC 244618 ||| | || || | |||||| ||||| ||| | || | ||| ||| ||| Sbjct 224668 TGGTTCACATCAATAATCTTGTTCAGGTTACGGACAACCACCTTGGTGACTTCGTGAAGC 224727 Query 244619 AGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGG 244678 || |||||| || | | ||| | | || || || | | | |||| Sbjct 224728 TTCTTAAAGTCATA-------GCACCCTTCG---TTGTAGTCGACATAGGCAGG--GAGG 224775 Query 244679 GCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCG 244738 || | ||||| ||||||||| || ||||| || | | ||||| | |||||| Sbjct 224776 GCCAAAGAGGCCAAGTTGCAGACAGCAACCTCATCAGGGGCACAGTACTCAATAATCTCA 224835 Query 244739 GTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAG 244798 |||||||||||| || |||||| ||||||| || || ||| |||| ||||||| Sbjct 224836 GTGCAGAGGTTAGAGCTGCGGATGGTACCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAG 224895 Query 244799 GCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTC 244858 ||||||||||||||||||||| || |||||| |||||| | |||| | | | Sbjct 224896 TGGTCCTTGTAGAGCATGAAGGGGTTGCCAGTCTCGGTCTGGGCTTCCAGGATGGAATAC 224955 Query 244859 CAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTAC 244918 || || | | ||| || ||| ||||| | ||||| |||||| ||| Sbjct 224956 CACAGCTTCTGAGCGCGGATAGTCTTGCGACCACGTCCCTCCTTCTCGTACTTCTCATAC 225015 Query 244919 AGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATG 244978 | ||||||||||| ||| || || | ||||| |||||| ||||||||| Sbjct 225016 AAAGCCTCGAACTCCTCGCCATAGCAGTCAGCAAGGCCAGGGCACTCGTTGGGGCACATG 225075 Query 244979 AGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCC 245038 || |||| || | | || || | || ||||||||| ||||| |||||||| || Sbjct 225076 AGCGTCCAGTCCAAGTTCTTCTCAACACGCTTCATGAAGAGATCGGGAATCCAGAGAGCA 225135 Query 245039 TGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAG 245098 |||| | ||| | | | ||| ||| || |||||| | || || | || Sbjct 225136 AGGAATAAGTCGCGAGCACGGACCTCCTCCTTACCGTGGTTCTTGCGGAGATCAAGGAAC 225195 Query 245099 TCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTG 245158 |||||||| || ||||||| ||||||| ||||| || | ||| || || ||||||||| Sbjct 225196 TCAAAGACATCAGCGTGCCATGGCTCCAGGTAGATGGCAAAGGCACCAGGACGCTTGTTG 225255 Query 245159 CCTCCCTGGTCCACCATCCTCTCGAGCG-CGTTGAAGATGCGCAGGGTAGGCACTATGCC 245217 || |||||||| || || | || | |||||||| || || | || | || || Sbjct 225256 CCACCCTGGTCGACGTATCTGGC-AGTGTTGTTGAAGACTCGAAGCATGGGAATGATACC 225314 Query 245218 GTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGA 245277 ||| || |||||||||||| ||||| | || || | | || | | || | Sbjct 225315 GTTGGAAGTACCGTTGGTGCCCGCAATGTAAGAACCGGTGGCACGGATGCGGTGGACGTT 225374 Query 245278 CATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTAT 245337 || ||| | ||||| || |||||| || | ||| || |||| | ||||| || Sbjct 225375 CAAGCCGATGCCGCCAGCCATCTTGGAAATCATGGCACACGTCTTCAGAGTGTCATAGAT 225434 Query 245338 GCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGG 245397 ||||| ||||| || |||||||| | || ||||| || |||||||||| || || Sbjct 225435 ACCCTCAATGCTATCGTCCTTCATGTCAACCAAGAAGCATGAAGACAGCTGGGCCTGCGG 225494 Query 245398 GCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGA 245448 | | | | |||||| || |||||| ||||||||| ||| | |||||| Sbjct 225495 GGTACCAGCGTTGAAGAGGGTGGGGGAGGCGTGGGTGAAGAACTTGCTCGA 225545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944337936946320