Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001835465.1_202016-10-24] 107 sequences; 45,820,083 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq1 122 2e-22 >seq1 Length=17084797 Score = 122 bits (134), Expect = 2e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || || |||| ||||| || || || || || |||||| Sbjct 3412104 CCACCACGGAGACGGAGGACAAGGTGAAGTGTGCTCTCCTTCTGAATGTTGTAGTCGCTC 3412163 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | ||||| ||||| || | || || || || ||||| |||||||| ||| ||| Sbjct 3412164 AAAGTGCGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGATCCGGGGGG 3412223 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || |||||||| || || | || || || || || | ||| || || || Sbjct 3412224 ATACCCTCCTTATCCTGAATCTTTGACTTGACATTGTCGATGGTATCAGAAGACTCCACC 3412283 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| ||||| || ||||| ||||||||||| |||||||| Sbjct 3412284 TCGAGGGTGATAGTCTTGCCAGTCAGGGTCTTGACGAAAATCTGCAT 3412330 Score = 113 bits (124), Expect = 1e-19 Identities = 142/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||||| || || || ||||| || | ||| || || || ||| Sbjct 3412654 TCCTTCTGGATGTTGTAGTCGGACAGAGTTCGGCCGTCCTCGAGTTGCTTGCCAGCAAAG 3412713 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || |||||||| || | ||||| || || || ||||| || || | ||||| || Sbjct 3412714 ATAAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGAATCTTGGACTTCACATTG 3412773 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| || || || || || ||||| ||||| |||||||| ||||||||| Sbjct 3412774 TCGATGGTGTCGGATGACTCCACCTCAAGGGTGATAGTCTTACCGGTCAGGGTCTTGACG 3412833 Query 288463 AATATCTGCATTATG 288477 || || ||||| ||| Sbjct 3412834 AAGATTTGCATGATG 3412848 Score = 98.7 bits (108), Expect = 2e-15 Identities = 139/194 (72%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || |||||| || ||||| || || || | || || || |||||| Sbjct 1761248 TCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCCAGCTGCTTACCAGCGAAG 1761189 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| ||||| || || ||| || || || || |||||||| || | || || Sbjct 1761188 ATCAATCGCTGCTGG---TCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACA 1761132 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | ||| || || || || || |||||||||||||| || || |||||| Sbjct 1761131 TTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTG 1761072 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 1761071 ACGAAAATCTGCAT 1761058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179652782767546