Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001835465.1_202016-10-24] 107 sequences; 45,820,083 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq93 223 4e-53 seq97 131 2e-25 >seq93 Length=305044 Score = 223 bits (246), Expect = 4e-53 Identities = 1163/1839 (63%), Gaps = 43/1839 (2%) Strand=Plus/Plus Query 113558 TCAAGGCTGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTC 113617 |||| | ||||||| |||||| || ||||| | || || |||||||| || ||| Sbjct 223864 TCAACGGTGAACTGGATGGGTGCAGCTGCGGCCTGGGTACGAAGATAGTACATGCCGGTC 223923 Query 113618 TTGAGCCCCTGCTTCCAGGCATACATATGCATCGAGGACAACTTGGAGAGTGTTGGACTT 113677 ||||| || |||||||| || | ||||| || | |||| | ||| || Sbjct 223924 TTGAGACCAAGCTTCCAGCCAGTGAAGTGCATGCTGGTAATCTTGCCCATTGTGGGGTCC 223983 Query 113678 TCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCACGATCCGCCGCCATA 113737 | |||| || ||||| ||||| || || ||||| ||||| || |||||||| Sbjct 223984 TTCATGTGGATGTTCAGGGACTGGGACTGGTCAATGAAAGCACCACGGTCGGCCGCCATC 224043 Query 113738 TCAATCACATCCTTCATCTTGA----TTTCCCACACAGTTCTGTAGAGGTTCTTAATATC 113793 | | || || || ||| | ||||| || || |||| | ||| ||||| Sbjct 224044 TGGA-CA-AT--TTGGCGCTGAGAAATCTCCCAGACGGTCTTGTACAATGCCTTGATATC 224099 Query 113794 ATCTGGGATATCCACGATATTTTGGATGGAGCCACCCGCCTTGACCATGAGATCCTTCAT 113853 || ||||| | ||| || || |||||||| | | | || | | |||||| Sbjct 224100 CTCGGGGATGTTGGGGATGTTCTGAATGGAGCCGTTCTCAGCAATAATACGGTTCTTCAT 224159 Query 113854 ATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTTA---TTGACAAC 113910 | | |||||||| ||| | | || |||| |||| || | |||||||| Sbjct 224160 GGCATCGGACCAGAGGCCAGTGTCGACCAGGTCCTT---GAGAAGCCAAGGGTTGACAAC 224216 Query 113911 AACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCA 113970 ||||| || || ||| || | | | ||||| |||| ||||| ||||| ||||| Sbjct 224217 CTGGAACTCGCCGGCAAGGACACGGCGCTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCA 224276 Query 113971 CTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCT 114030 ||||||||| |||| ||| |||| ||| ||| || ||||| || || | ||| | ||| Sbjct 224277 CTCATTGTTGCCCAGGATCTGGGAAGTGCTGGCAGTTGGCATAGGGGCAACGAGCAAGCT 224336 Query 114031 GTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGGGCGTCCCAGTC---GTAGT-TGA 114086 ||| || | ||| | ||| | || | |||||||| | |||||| || ||| || Sbjct 224337 GTTGCGCACACCGTGCTCCTTGATCTGCTCCTTGAGAGAGTCCCACTCCCACAAGTCGGA 224396 Query 114087 GCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGAGGCTGGCGATCCCT 114146 | | || | | |||||| || || || ||||| || | || || || ||||||| Sbjct 224397 G----GGCTTGACATCCCACATGTCGAATTGAAGGATGCCCTCAGATGCAGGTGATCCCT 224452 Query 114147 CAAATGTCTCGTATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGT 114206 |||| | ||| |||||||| |||| || | || ||||| ||||| |||| Sbjct 224453 TGAATGATTGGTAGGGGCCCTCGACCTTGGCAATCTCCATAGAAGCCTCAAGGGCAGCGT 224512 Query 114207 GATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGA 114266 | || ||||||||||| || | |||| | ||||| || ||||| | | Sbjct 224513 GGTAGATTGTCTCAAAGATCTGCTTGTTCAGCTCGCGAGCCTCAGGAGACTCAAAAGGCA 224572 Query 114267 GTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTC 114326 || || || |||| || ||||| |||||||| | || || || | || | Sbjct 224573 TGCGCAGGGCAAGGAAAGCATCAGCAAGACCCTGGACACCAACACCGATAGGTCTGTGAC 224632 Query 114327 TCATATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTA 114386 ||| || || || || || || || || ||| ||| |||| | | || | Sbjct 224633 GCATGTTGCTGTTACGGGCCTCCTGGACAGGGTAGTGGTTCACATCAATAATCTTGTTCA 224692 Query 114387 GATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCT 114446 | || | || ||||| |||| ||| |||||||| | | ||| | | | | Sbjct 224693 GGTTACGGACAACCACCTTGGTGACTTCGTGAAGCTTCTTAAAGTCATAGCACCCTTCGT 224752 Query 114447 CTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCT 114506 | | |||||| ||| ||||| | || |||| || || |||| |||||| Sbjct 224753 TGTAGTCGACATAGGCAGGGAGGGCCAAAGAGGCCAAGTTGCAGACAGCAACCTCATCAG 224812 Query 114507 TATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCT 114566 || |||||| ||||| || || || | || || || ||||| |||| ||||| Sbjct 224813 GGGCACAGTACTCAATAATCTCAGTGCAGAGGTTAGAGCTGCGGATGGTACCCAGGTTCT 224872 Query 114567 TTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCG 114626 | || || ||| ||| || |||||||| |||||| | || | || ||||| | Sbjct 224873 TCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTAGAGCATGAAGGGGTTGCCAGTCTCGG 224932 Query 114627 TTTGGGACTTGAGAATAGCCTTCCAGA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGC 114685 | |||| | || || | | ||| | | || | || | | ||| | | || Sbjct 224933 TCTGGGCTTCCAGGATGGAATACCACAGCTTCTG-AGCGCGGATAGTCTTGCGACCACGT 224991 Query 114686 CCCTCCTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGC 114745 ||||||| ||||||||| || | || || ||||| || || | || | || Sbjct 224992 CCCTCCTTCTCGTACTTCTCATACAAAGCCTCGAACTCCTCGCCATAGCAGTCAGCAAGG 225051 Query 114746 CCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCA--CCCTCCTCAACACGCTTCA 114803 || || || | ||||| | ||| | ||| | ||| || |||||||||||||| Sbjct 225052 CCAGGGCACTCGTTGGGGCACATGAGCGTCCA--GTCCAAGTTCTTCTCAACACGCTTCA 225109 Query 114804 TGAAGAGGTCTGGGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCC 114863 ||||||| || || ||||||||||| ||| | || ||| || | || || | | Sbjct 225110 TGAAGAGATCGGGAATCCAGAGAGCAAGGAATAAGTCGCGAGCACGGACCTCCTCCTTAC 225169 Query 114864 CCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACA 114923 | || || || | || | || || | || ||| |||||||| || |||||||| | Sbjct 225170 CGTGGTTCTTGCGGAGATCAAGGAACTCAAAGACATCAGCGTGCCATGGCTCCAGGTAGA 225229 Query 114924 CCGCGATTGACCCCTTACGACG------ACCAGCCTGGTTTACATACCTCGCTGTGGCAT 114977 || | | || | |||| ||| |||||| || || || || ||| | Sbjct 225230 TGGCAAAGGCACC---AGGACGCTTGTTGCCACCCTGGTCGACGTATCTGGCAGTGTTGT 225286 Query 114978 TAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAG 115037 | || || |||||||| ||||||||||| | || || || || ||| ||| || Sbjct 225287 TGAAGACTCGAAGCATGGGAATGATACCGTTGGAAGTACCGTTGGTGCCCGCAATGTAAG 225346 Query 115038 ACTTATTGGCTCTGACATCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTT 115097 | |||| | || |||| || || || || || || ||| ||| || || Sbjct 225347 AACCGGTGGCACGGATGCGGTGGACGTTCAAGCCGATGCCGCCAGCCATCTTGGAAATCA 225406 Query 115098 GCGCGCACTCCGTGAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAA 115157 || ||| | | ||| || | ||||| || || || || |||| | | | | Sbjct 225407 TGGCACACGTCTTCAGAGTGTCATAGATACCCTCAATGCTATCGTCCTTCATGTCAACCA 225466 Query 115158 GGAAGCAGCTCGACATTTGTGGCCT-TGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCG 115216 |||||| |||| || ||||| || |||||||||||||||||||| || | ||| Sbjct 225467 AGAAGCATGAAGACAGCTG-GGCCTGCGGGGTACCAGCGTTGAAGAGGGTGGGGGAGGCG 225525 Query 115217 TGGATGAACATACCTTG--GGACATCTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTT 115274 ||| ||| | | |||| ||||| | ||| ||||||| ||| |||||| | Sbjct 225526 TGGGTGA--AGAACTTGCTCGACATGAGGTGGTATGTCTCCAGGACACGCTCAATGTCGT 225583 Query 115275 CCCCGTGAATACCGATCGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATAC 115334 | || || || | | || ||||||| ||||| || ||| || | | | | Sbjct 225584 CTCCCCAGATGCCAACAGCCACTCGCATAATCATGTGCTGTGGTCGCTCAACAATCTTGC 225643 Query 115335 CATCGAGCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGA 115373 |||| ||| || ||||||| | |||||| ||||||| Sbjct 225644 CATCAAGCTTCAGGAGGTATGACCGCTCCAAAGTCTTGA 225682 >seq97 Length=261666 Score = 131 bits (144), Expect = 2e-25 Identities = 348/525 (66%), Gaps = 15/525 (3%) Strand=Plus/Minus Query 126046 GGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCC 126105 |||||| || ||| |||||||||||||| |||||||| || || || ||| ||| || Sbjct 3759 GGCAAAGTCGGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGGCC 3700 Query 126106 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGAT 126165 ||||||||||| |||||||| | |||||| || | ||| | || ||||||||| Sbjct 3699 GGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGATGCAAAGGCGCCGCTGAAGAAGAT 3640 Query 126166 TCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTC--- 126222 ||||| || || || |||| || |||| ||||||||| || || |||| Sbjct 3639 ACCCTCGACGGCAGCAAAGGCAACCAGGCGCTGAGCAAAGGA---AGAGTTCTTGTCCTG 3583 Query 126223 AAACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTC 126282 | |||||| || ||||| | ||||| || || || |||| |||| || || | Sbjct 3582 GATCCACTTGATGGCCCAGTCAGCCTTCTTGCGAATGCAAGGGATAGTCTCAATGGCGTT 3523 Query 126283 AAAGAGTTCCTT--CTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATAT 126340 ||||| | || | ||| | || |||||||| | || ||||| || || Sbjct 3522 GAAGAGATAGTTGCGCTGGCTGTT--CTCCTTGATGTAGGTGTCGATGAGCAGGGAGTAG 3465 Query 126341 GTTTCGCCGTGGACCAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCT 126399 || ||| ||||| | | ||| || | ||| | ||||||| | || || ||| Sbjct 3464 GTCTCGGAGTGGATGTTCTCCATCAT-GATCTGGAAGCCGTAGAAGCATCGAGCCTCGGG 3406 Query 126400 TATCTGTACCTCATCGGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCC 126459 ||||| ||||| || || | | ||||| ||||| ||||| || | Sbjct 3405 GATCTGGACCTCGCCGCTGAAGCGCTCGACCAGGTTCTCGTTGACAATGCCATCAGAGGC 3346 Query 126460 AGCAAAAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTT 126516 ||||| || |||||||| | ||||| | || || | ||||||| || | || Sbjct 3345 GGCAAAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTT 3286 Query 126517 CCAGTCGTCAAGATCCTTCGAGAGATCTACCTCCTCCGCAGTCCA 126561 |||||||| |||||||| || || || | ||| || || ||||| Sbjct 3285 CCAGTCGTGCAGATCCTTGGACAGGTCAATCTCTTCGGCGGTCCA 3241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597352801039560