Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001835465.1_202016-10-24] 107 sequences; 45,820,083 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq1 96.9 3e-15 >seq1 Length=17084797 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 64253 TCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAA 64312 || || ||||||||||| || | ||||| |||| |||||||||||||| ||| | Sbjct 3412140 TCCTTCTGAATGTTGTAGTCGCTCAAAGTGCGGCCGTCCTCAAGCTGCTTGCCAGCAAAG 3412199 Query 64313 ATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACC 64372 || || |||||||| || || || || || || || || || || ||| ||| ||| Sbjct 3412200 ATAAGACGCTGCTGATCCGGGGGGATACCCTCCTTATCCTGAATCTTTGACTTGACATTG 3412259 Query 64373 TCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACG 64432 || | |||||| | ||||| || | || | |||||||| |||| || || ||| Sbjct 3412260 TCGATGGTATCAGAAGACTCCACCTCGAGGGTGATAGTCTTGCCAGTCAGGGTCTTGACG 3412319 Query 64433 AAAATTTGCAT 64443 ||||| ||||| Sbjct 3412320 AAAATCTGCAT 3412330 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || || || | || || || || ||||||||||| || | || ||| || | || Sbjct 3412346 AAGGACAAGGTGGAGAGTAGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTTCGGCCATC 3412405 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||||||||||| || || | ||||| ||||||||||| |||||||| || || || || Sbjct 3412406 CTCAAGCTGCTTACCAGCGAAGATGAGTCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTC 3412465 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || || || ||| ||| || | |||||| | ||||| || | || | ||| Sbjct 3412466 CTGGATCTTGGACTTCACATTGTCGATGGTATCAGAAGACTCCACCTCGAGGGTGATGGT 3412525 Query 64411 CTTGCCGGTCAAAGTTTTTACGA 64433 ||| ||||| | || || |||| Sbjct 3412526 CTTTCCGGTGAGGGTCTTGACGA 3412548 Score = 93.3 bits (102), Expect = 4e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 64253 TCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAA 64312 || || || |||||||| || | |||||| ||||||| |||||||| || || | Sbjct 3411912 TCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGACCGTCTTCCAGCTGCTTACCAGCGAAG 3411971 Query 64313 ATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACC 64372 || | ||||||||||| |||||||| || || || ||||| || || ||| || Sbjct 3411972 ATCAAGCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCTTGGATCTTGGACTTGACGTTG 3412031 Query 64373 TCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACG 64432 || | |||||| | ||||| || | || | ||||||||||||| || || || Sbjct 3412032 TCGATGGTATCAGAAGACTCCACCTCGAGGGTGATAGTCTTGCCGGTCAGGGTCTTGACA 3412091 Query 64433 AAAATTTGCAT 64443 || |||||||| Sbjct 3412092 AAGATTTGCAT 3412102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499644131725080