Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001835465.1_202016-10-24] 107 sequences; 45,820,083 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq93 284 1e-71 >seq93 Length=305044 Score = 284 bits (314), Expect = 1e-71 Identities = 1107/1713 (65%), Gaps = 44/1713 (3%) Strand=Plus/Minus Query 93715 AATTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGC 93774 || ||| | ||||| | |||||| ||| ||||| ||| |||||||| ||| | |||||| Sbjct 225701 AACTACCAATACTTCGGCTTCAAGACTTTGGAGCGGTCATACCTCCTGAAGCTTGATGGC 225642 Query 93775 AGGGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCAC 93834 | | || |||||||| || || || | ||||| || || | || || || || Sbjct 225641 AAGATTGTTGAGCGACCACAGCACATGATTATGCGAGTGGCTGTTGGCATCTGGGGAGAC 225582 Query 93835 GACATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCC 93894 ||||| | ||| || | | | | |||| | |||| | ||| ||| Sbjct 225581 GACATTGAGCGTGTCCTGGAGACATACCACCTCATGTCGAGCAAGTTCTTCACCCACGCC 225522 Query 93895 ACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGAT- 93953 |||| ||||| |||||||| || |||||| | | ||| ||||||| || ||| || | Sbjct 225521 TCCCCCACCCTCTTCAACGCTGGTACCCCGCAGGCCCAGCTGTCTTCATGCTTCTTGGTT 225462 Query 93954 GACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCAT 94013 ||| | |||| ||| ||| || || | |||| || ||| ||||| | || Sbjct 225461 GAC-ATGAAGGACGATAGCATTGAGGGTATCTATGACACTCTGAAGACGTGTGCCATGAT 225403 Query 94014 CTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTA 94073 || || || || || ||||| | | |||||| | | ||||||| ||||| || Sbjct 225402 TTCCAAGATGGCTGGCGGCATCGGCTTGAACGTCCACCGCATCCGTGCCACCGGTTCTTA 225343 Query 94074 CATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAA 94133 ||| || ||||| || || |||||||| || | || ||||| || ||||||||||| Sbjct 225342 CATTGCGGGCACCAACGGTACTTCCAACGGTATCATTCCCATGCTTCGAGTCTTCAACAA 225283 Query 94134 CGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCT 94193 | | || | ||||| ||||||||||| | | | ||| | || || |||| || Sbjct 225282 CACTGCCAGATACGTCGACCAGGGTGGCAACAAGCGTCCTGGTGCCTTTGCCATCTACCT 225223 Query 94194 CGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGA 94253 ||||| |||||||| || || | ||| | || || || ||||||||||| || || Sbjct 225222 GGAGCCATGGCACGCTGATGTCTTTGAGTTCCTTGATCTCCGCAAGAACCACGGTAAGGA 225163 Query 94254 TCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACG 94313 || | || | ||| | ||| ||||||||| | || || || || ||||| || Sbjct 225162 GGAGGTCCGTGCTCGCGACTTATTCCTTGCTCTCTGGATTCCCGATCTCTTCATGAAGCG 225103 Query 94314 CGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGA 94373 || ||||| |||| | ||||| || | || ||||| || || || || || | || Sbjct 225102 TGTTGAGAAGAACTTGGACTGGACGCTCATGTGCCCCAACGAGTGCCCTGGCCTTGCTGA 225043 Query 94374 CGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGG-CAAGGCCA 94432 | | ||| | || || | ||||||| ||||| | |||| | || | Sbjct 225042 CTGCTATGGCGAGGAGTTCGAGGCTTTGTATGAGAAGTACGAGAAGGAGGGACGTGGTC- 224984 Query 94433 GGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGG 94492 | ||| ||| ||| |||||||||| || ||| |||| | ||| ||||| | Sbjct 224983 GCAAGACTATCCGCGCTCAGAAGCTGTGGTATTCCATCCTGGAAGCCCAGACCGAGACTG 224924 Query 94493 GTACGCCCTACATCTTGTTCAAGGA-CTCTGTCAACGCCAAGTCCAACCAGCAGCACCTC 94551 | | |||| ||| | | |||||| | ||| |||| |||| ||||||| || |||| Sbjct 224923 GCAACCCCTTCATGCTCTACAAGGACCACTG-CAACCGCAAGAGCAACCAGAAGAACCTG 224865 Query 94552 GGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAG 94611 || ||| ||||| || || ||||| |||||| | ||||| | | || || ||| Sbjct 224864 GGTACCATCCGCAGCTCTAACCTCTGCACTGAGATTATTGAGTACTGTGCCCCTGATGAG 224805 Query 94612 ATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTACACG 94671 ||||||| || ||| ||| ||| | ||| | | | || ||| ||||| Sbjct 224804 GTTGCTGTCTGCAACTTGGCCTCTTTGGCCCTCCCTGCCTATGT-CGA-----CTACA-- 224753 Query 94672 TCTACTGCTTCGTTCGATCTGGAGGAGCTT-GTGAACTTCGCGGGAAGGATGGTCTTGAA 94730 | | | | | | || | || ||||| ||| | | | || | ||| || Sbjct 224752 ACGAAGGGTGC-TATGACTTTAAGAAGCTTCACGAAGTCACCAAGGTGG-TTGTCCGTAA 224695 Query 94731 CCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAACCT 94790 |||||||| | | || || |||| |||||| |||| |||||| ||| ||| | Sbjct 224694 CCTGAACAAGATTATTGATGTGAACCACTACCCTGTCCAGGAGGCCCGTAACAGCAACAT 224635 Query 94791 GAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGATGCG 94850 | || | || ||||| | || ||||||||| | || || || | | |||| Sbjct 224634 GCGTCACAGACCTATCGGTGTTGGTGTCCAGGGTCTTGCTGATGCTTTCCTTGCCCTGCG 224575 Query 94851 TCTGCCCTACGACTCTGTCGACGC-GGCGGGTTTGAATTTGAACATATTCGAAAGCATTT 94909 |||| | || ||| || || ||| | |||| | | || || || | || | Sbjct 224574 CATGCCTTTTGAGTCTCCTGAGGCTCGCGAG-CTGAACAAGCAGATCTTTGAGACAATCT 224516 Query 94910 ATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGGCCACACGAAT 94969 | ||| ||| | | || | | | |||| || || || || || ||| Sbjct 224515 ACCACGCTGCCCTTGAGGCTTCTATGGAGATTGCCA---AGGTCGAGGGCCCCTACCAAT 224459 Query 94970 CGTTCCGCGGATCGCCCTTGGAAC--AGGGCATTTTTCAGTTCGACCTCTGGGGTGTGAA 95027 | ||| ||||| || || | | ||||||| |||| |||||| | |||| ||| || Sbjct 224458 CATTCAAGGGATCACC--TGCATCTGAGGGCATCCTTCAATTCGACATGTGGGATGTCAA 224401 Query 95028 GCCCTCGGGTCTGTACGACTGGGAAGCTCT--ACGCGCTGATGTTATCAAACACGGTGTG 95085 |||||| | ||| || ||||| |||| | | || || | | | ||||||||| Sbjct 224400 GCCCTCCGACTTGTGGGAGTGGGACTCTCTCAAGGAGCAGA--TCAAGGAGCACGGTGTG 224343 Query 95086 AAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAAC 95145 ||| |||| || ||||| ||||| || ||| ||| | |||||||| |||||| Sbjct 224342 CGCAACAGCTTGCTCGTTGCCCCTATGCCAACTGCCAGCACTTCCCAGATCCTGGGCAAC 224283 Query 95146 AACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAA 95205 || |||| ||||| |||| |||||||||| | ||| | | || || || ||||| || Sbjct 224282 AATGAGTGCTTCGAGCCCTACACCTCCAACATCTACCAGCGCCGTGTCCTTGCCGGCGAG 224223 Query 95206 TTCCCCGTCATCAACAAGCACCTCCTACGGGACCT-GACGTCTCTGG-GTGT-GTGGGGT 95262 |||| || ||||| || || |||||| | || | |||| | | || | | Sbjct 224222 TTCCAGGTTGTCAACCCTTGGCTTCTCAAGGACCTGGTCGACACTGGCCTCTGGTCCGAT 224163 Query 95263 GACAAGGTCAAGAACC----AACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCGCA 95318 | || | ||||||| | |||| | ||||||||| | ||||||||||| | Sbjct 224162 GCCA---TGAAGAACCGTATTATTGCT----GAGAACGGCTCCATTCAGAACATCCCCAA 224110 Query 95319 AATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGCGTGAT 95378 || || ||||| |||||||| | ||||||||||| |||||||| | |||||| || Sbjct 224109 CATCCCCGAGGATATCAAGGCATTGTACAAGACCGTCTGGGAGATTTCTCAGCGCCAAAT 224050 Query 95379 ACTCGACCACGCGGCCGCCCGCGGGCCCTTCAT 95411 || | ||||||| ||| || | ||||| Sbjct 224049 TGTCCAGATGGCGGCCGACCGTGGTGCTTTCAT 224017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494722538307720