Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001835465.1_202016-10-24] 107 sequences; 45,820,083 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq97 196 5e-45 seq93 143 3e-29 seq1 125 7e-24 >seq97 Length=261666 Score = 196 bits (216), Expect = 5e-45 Identities = 511/767 (67%), Gaps = 33/767 (4%) Strand=Plus/Plus Query 52086 AACGATGACGAGCGCTATTTTATCAAGCACGTGTTGGCGTTCTTCGCCGCCGCCGATAGC 52145 |||||||||||| || || ||| ||| | |||| ||||| |||||| | ||| || Sbjct 3298 AACGATGACGAGAAGTACTTCATCTCTCACATCCTGGCCTTCTTTGCCGCCTCTGATGGC 3357 Query 52146 ATCGTGAACATTAACCTCATCGAGTACATGCAGCGGAACGTTCCGGAACTC-GAGGCGCA 52204 || || ||| ||||| ||||| | | |||||| | ||| || | | ||||| | Sbjct 3358 ATTGTCAACGAGAACCTGGTCGAGCGCTT-CAGCGGCGAGGTCCAGATCCCCGAGGCTCG 3416 Query 52205 ATACTTTTATAATTTGCAAGTGCTCATCGAGTGCGTGCACACGGAGATGTACAATCTGCT 52264 || ||| || || || | | || ||| | | ||| | |||| ||| ||||| Sbjct 3417 ATGCTTCTACGGCTTCCAGATCATGATGGAGAACATCCACTCCGAGACCTACTCCCTGCT 3476 Query 52265 CATTGAGCAGCTG-ATAAAAGATGAGCA-CGAGCGCGACACGCTGCTGAATGCGTTCGAG 52322 ||| || || || || || || || || | ||||| || || | || || | ||| Sbjct 3477 CATCGA-CACCTACATCAAGGA-GAACAGCCAGCGCAACTATCTCTTCAACGCCATTGAG 3534 Query 52323 CACGTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACC 52382 | || ||| ||||||| |||||| | ||||| || ||||||||| || | | | | Sbjct 3535 ACTATCCCTTGCATTCGCAAGAAGGCTGACTGGGCCATCAAGTGGATCCAGGACAAGAAC 3594 Query 52383 GCCACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGC 52442 | | | || ||||| |||| ||||| || |||||||| | || || |||| Sbjct 3595 TCTTCCTTTGCTCAGCGCCTGGTTGCCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGC 3654 Query 52443 AGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGC 52502 |||||| ||||||| | | || | | ||| | |||||||||||||| || | Sbjct 3655 GCCTTTGCATCCATCTTCTGGCTCAAGAAGCGAGGTCTCATGCCCGGCCTGACCTTTTCC 3714 Query 52503 AACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCT---------C 52553 |||||| | || || || ||||| || |||||||| |||||||| ||||| | Sbjct 3715 AACGAGCTCATCTCTCGTGACGAGGGTCTGCACACCGACTTTGCCTGCCTGTTGCACTCC 3774 Query 52554 TACTACAAGACGCGCGTGACCGAAAAATTGGATTCGGACACGATCC-TGAGCATGTTCAA 52612 || ||||| |||| | | | ||| ||||| ||| ||| ||| Sbjct 3775 CACCTCAAGAACCGCGCCAGCAA------------GGAGGTGATCCGTGA-CATCATCAC 3821 Query 52613 GGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGG 52672 || || || || || | ||||| || || | || || || || |||||||| Sbjct 3822 CGATGCTGTCCGAATTGAGCAAGAGTTCTTGACCGAGGCTCTCCCCTGCGCCCTGCTGGG 3881 Query 52673 CATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTG-TTGGTGC 52731 ||||||| | | | ||| |||||||||||||||| || || || ||| ||| ||| Sbjct 3882 CATGAACTCCAACTTGATGAAGCAGTACATCGAGTTTGTTGCTGACCGCCTGCTTGTTGC 3941 Query 52732 AGCTCGGGCAGCCA-AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATT 52790 ||| |||| | | ||| || ||| || ||| || ||||| |||||| | |||||| Sbjct 3942 -TCTC-GGCAACGAGAAGATCTACAAGTCTTCCAACCCCTTTGACTTTATGGAGAACATT 3999 Query 52791 TCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 || |||| |||||||||||||| || |||||||| || | ||| || Sbjct 4000 TCTCTTGGTGGCAAGACCAACTTCTTTGAGAAGCGTGTTGCCGACTA 4046 >seq93 Length=305044 Score = 143 bits (158), Expect = 3e-29 Identities = 764/1196 (64%), Gaps = 61/1196 (5%) Strand=Plus/Plus Query 153390 GGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCGACGCCGATGGGTCGA 153449 ||||||||||| | || || || || |||||||||| ||| || ||||| |||| Sbjct 224569 GGCATGCGCAGGGCAAGGAAAGCATCAGCAAGACCCTGGACACCAACACCGATAGGTCTG 224628 Query 153450 TGCTTCTCGTTGCTGCGCCTCGCGCTCGCT--ATGGGATAGTGATTGCGATCGATAATTT 153507 || | ||||||| | || ||| || | || ||||| || ||| ||||| | Sbjct 224629 TGACGCATGTTGCTGTTACGGGC-CTC-CTGGACAGGGTAGTGGTTCACATCAATAATCT 224686 Query 153508 TGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTCGAAATCATAGGTCA 153567 |||| ||||| || || ||||| || || | | | ||| |||| || |||||| | Sbjct 224687 TGTTCAGGTTACGGACAACCACCTTGGTGACTTCGTGAAGCTTCTTAAAGTCATAGCACC 224746 Query 153568 TTTCGTCGACG----CGTACGCATCGATTCACGGCAATAGACGCCAGATTACAGACGGCC 153623 ||||| | | | || ||| | | ||| | ||| |||| || ||||| || Sbjct 224747 CTTCGTTGTAGTCGACATAGGCAGGG----AGGGCCAAAGAGGCCAAGTTGCAGACAGCA 224802 Query 153624 GTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTT---GCTGCATTTTATG 153680 ||| || | | | | ||||| | ||||| | ||||||||| ||||| ||| Sbjct 224803 ACCTCATCAGGGGCACAGTACTCAATAATCTCAGTGCAGAGGTTAGAGCTGC---GGATG 224859 Query 153681 ACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGT 153740 |||| || | ||| ||||| ||||| ||||| ||| ||| |||||||| | || Sbjct 224860 GTACCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTAGAGCATGAAGGGG 224919 Query 153741 CCGCCGGTCTCGACTTGCGTTTCGACGAT--AAACCTATGCAGGTCCTGCGCTCGCACCC 153798 ||| |||||| || | ||| | ||| || | | ||| | ||| || || | Sbjct 224920 TTGCCAGTCTCGGTCTGGGCTTCCAGGATGGAATACCA--CAGCTTCTGAGCGCGGATAG 224977 Query 153799 GCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACTCGTCGCCGT 153858 || ||| || ||||| ||||||| ||| |||| ||| ||||| ||||| | Sbjct 224978 TCTTGCGACCACGTCCCTCCTTCTCGTACTTCTCATACAAAGCCTCGAACTCCTCGCCAT 225037 Query 153859 AGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCA---CATATCGTCGG 153915 ||||||| || ||||| || |||| | || ||||| |||| ||| || | || Sbjct 225038 AGCAGTCAGCAAGGCCAGGGCACTCGTTGGGGCACATGAGCGTCCAGTCCAAGT--TCTT 225095 Query 153916 CGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCT 153975 | | || || |||||| ||||| || | |||||| || | | |||||| || Sbjct 225096 C-TCAACACGCTTCATGAAGAGATCGGGAATCCAGAGAGCAAGGAATAAGTCGCGAGCAC 225154 Query 153976 TGCAATCCTCCGCGCCCATGTTGCGTTTC--AGATTGAGCACGCTATAGATGTCGGCGTG 154033 | |||||| || ||| || | |||| || | | ||| || ||||| Sbjct 225155 GGACCTCCTCCTTACCGTGGTT--CTTGCGGAGATCAAGGAACTCAAAGACATCAGCGTG 225212 Query 154034 CCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGC---TTTCCGCCCTGATCGACGTG 154090 ||| || || | ||||| ||| | |||||| |||| || || ||||| ||||||| Sbjct 225213 CCATGGCTCCAGGTAGATGGCAAAGGCACCAGGACGCTTGTTGCCACCCTGGTCGACGTA 225272 Query 154091 GCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGCGGTGCCGTTGGT 154150 | | | ||||||||||| || | |||||| | ||| | | || |||||||| Sbjct 225273 TCTGGCAGTGTTGTTGAAGACTCGAAGCATGGGAATGATACCGTTGGAAGTACCGTTGGT 225332 Query 154151 ---CGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTAACGCCAATGCCGCC 154207 || | || | ||| ||| || | | || ||||| | ||| |||||||| Sbjct 225333 GCCCGCA---ATGTAAGAACCGGTGGCACGGATGCGGTGGACGTTCAAGCCGATGCCGCC 225389 Query 154208 -GCCGTACTTTGATATGGCAGCGCAGTCGCC--CAGCGTCCTGTAGATGCCGTCGATGCT 154264 ||| | ||| || || || ||| || | ||| || ||||| || || ||||| Sbjct 225390 AGCCAT-CTTGGAAAT--CATGGCACACGTCTTCAGAGTGTCATAGATACCCTCAATGCT 225446 Query 154265 ATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCGGAATGC-GCGTTCCCGCCG 154323 |||||| | | | | |||||| || ||| ||| || || ||| | || || || Sbjct 225447 ATCGTCCTTCATGTCAACCAAGAAGCATGAAGACAGCTG-GGCCTGCGGGGTACCAGCGT 225505 Query 154324 AAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCT---CATCATGCGGTACGTTT 154380 ||||||||||| ||||| || || | || ||| ||| | | |||| || | Sbjct 225506 TGAAGAGGGTGGGGGAGGCGTGGGTGAAGAACTT---GCTCGACATGAGGTGGTATGTCT 225562 Query 154381 CGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCATGAGCATGTGCT 154440 | | | | || || || || || ||||| | || || ||||| | |||||||| Sbjct 225563 CCAGGACACGCTCAATGTCGTCTCCCCAGATGCCAACAGCCACTCGCATAATCATGTGCT 225622 Query 154441 GCGGACGTTCGGCGACTCTATTG---TCAATCTTCAAGAGATATCCATTTTCGAGGGTTT 154497 | || || | | || | ||| |||| ||||| ||| ||| || | || | Sbjct 225623 GTGGTCGCT---CAACAATCTTGCCATCAAGCTTCAGGAGGTATGACCGCTCCAAAGTCT 225679 Query 154498 TGTAACCGAAATACTTGTATTCAAAATCTAGCTCATGAGCGATGGCCGCATCGAGC 154553 || | ||||| || | ||| | || ||| | |||| | ||||| | |||||| Sbjct 225680 TGAAGCCGAAGTATTGGTAGTTGAAGTCTCGATCATACACAATGGCAGAGTCGAGC 225735 >seq1 Length=17084797 Score = 125 bits (138), Expect = 7e-24 Identities = 148/197 (75%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| || ||| || |||||||||||| || || | | Sbjct 3412651 GACTCCTTCTGGATGTTGTAGTCGGACAGAGTTCGGCCGTCCTCGAGTTGCTTGCCAGCA 3412710 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG--TTTTA 138538 |||| |||||||| ||||| ||||| ||||| || ||||| ||| | || | || Sbjct 3412711 AAGATAAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTC-CTGAATCTTGGACTTCAC 3412769 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 |||| || | |||||||| ||||||||||| | || | || ||||| ||||| || | Sbjct 3412770 ATTG-TCGATGGTGTCGGATGACTCCACCTCAAGGGTGATAGTCTTACCGGTCAGGGTCT 3412828 Query 138599 TTACAAAAATCTGCATG 138615 | || || || |||||| Sbjct 3412829 TGACGAAGATTTGCATG 3412845 Score = 123 bits (136), Expect = 2e-23 Identities = 146/194 (75%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| ||||||||||||||||||| ||| || |||||| || || || || | | | Sbjct 3412139 CTCCTTCTGAATGTTGTAGTCGCTCAAAGTGCGGCCGTCCTCAAGCTGCTTGCCAGCAAA 3412198 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG--TTTTAAT 138540 ||| |||||||| || ||||| || ||||| || || || ||| | |||| || || Sbjct 3412199 GATAAGACGCTGCTGATCCGGGGGGATACCCTCCTTATC-CTGAATCTTTGACTTGACAT 3412257 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 || || | ||| || | ||||||||||||| || | || || |||||||| || || Sbjct 3412258 TG-TCGATGGTATCAGAAGACTCCACCTCGAGGGTGATAGTCTTGCCAGTCAGGGTCTTG 3412316 Query 138601 ACAAAAATCTGCAT 138614 || ||||||||||| Sbjct 3412317 ACGAAAATCTGCAT 3412330 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| |||| || | || | | | |||||||| || ||||||||||||||| Sbjct 1761284 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTC 1761225 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||| || || ||||| | |||| | ||||| |||||||| || Sbjct 1761224 AGGGTGCGGCCATCCTCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGGA 1761165 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| || || | ||||| | | |||||||| |||||||| Sbjct 1761164 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT-CGATGGTGTCGGAAGACTCCAC 1761106 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | ||| || || || || || || || ||||||||||| Sbjct 1761105 CTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 1761058 Score = 89.7 bits (98), Expect = 5e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| || |||||||||||||||| || || ||| || || || ||||| | | Sbjct 3411911 CTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGACCGTCTTCCAGCTGCTTACCAGCGAA 3411970 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTG 138542 ||| | ||||| ||||| ||||| || || || ||||| ||| || || | | Sbjct 3411971 GATCAAGCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCTTGGATCTTGGACTTGACGTT 3412030 Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602 || | ||| || | ||||||||||||| || | || || || ||||| || || || Sbjct 3412031 GTCGATGGTATCAGAAGACTCCACCTCGAGGGTGATAGTCTTGCCGGTCAGGGTCTTGAC 3412090 Query 138603 AAAAATCTGCAT 138614 ||| || ||||| Sbjct 3412091 AAAGATTTGCAT 3412102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496261736249040