Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001835465.1_202016-10-24] 107 sequences; 45,820,083 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq97 152 5e-32 seq1 140 3e-28 seq47 95.1 1e-14 seq93 86.0 6e-12 >seq97 Length=261666 Score = 152 bits (168), Expect = 5e-32 Identities = 477/728 (66%), Gaps = 23/728 (3%) Strand=Plus/Plus Query 46861 TGGCCTTCTTTGCCGCCGCCGACAGCATAGTCAACATCAACATCATCGAGCACATGCAGC 46920 ||||||||||||||||| | || |||| |||||| ||| | |||||| | | |||| Sbjct 3332 TGGCCTTCTTTGCCGCCTCTGATGGCATTGTCAACGAGAACCTGGTCGAGCGCTT-CAGC 3390 Query 46921 GCACCGTGCCCGAACTG-GAGGCGCAGTACTTTTACAATCAACAAGTGCTCATCGAATGC 46979 | | || || | ||||| | | ||| ||| || | | || || | Sbjct 3391 GGCGAGGTCCAGATCCCCGAGGCTCGATGCTTCTACGGCTTCCAGATCATGATGGAGAAC 3450 Query 46980 ATCCACACGGAAATGTACAACCTTCTCATACACGCCCTCATCAAAGACGAAGAGA-AGCA 47038 |||||| | || | ||| ||| ||||| || || |||||| || ||| || ||| Sbjct 3451 ATCCACTCCGAGACCTACTCCCTGCTCATCGACACCTACATCAAGGA-GAACAGCCAGC- 3508 Query 47039 AGCGACG--CTTTTGAACGGTTTCGAGAGCATGCCCTGCGTGCGCAGAAAGGCCGAGTGG 47096 || || || || |||| | |||| || || ||| | |||| ||||| || ||| Sbjct 3509 -GCAACTATCTCTTCAACGCCATTGAGACTATCCCTTGCATTCGCAAGAAGGCTGACTGG 3567 Query 47097 GCCATGAAGTACATTGAAAACGAAAACGTCACTCTGGCCGAACGTTTGATCGCTTTCGCC 47156 ||||| |||| || | || | ||| | | || | || || | || || || Sbjct 3568 GCCATCAAGTGGATCCAGGACAAGAACTCTTCCTTTGCTCAGCGCCTGGTTGCCTTTGCT 3627 Query 47157 ATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATATTTTACATGAAAACCAAA 47216 ||||||||| |||||||| ||| |||||| | || || | | || | | Sbjct 3628 GCCGTCGAGGGTATCTTCTTCAGCGGCGCCTTTGCATCCATCTTCTGGCTCAAGAAGCGA 3687 Query 47217 GGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCAC 47276 || | ||||||||||| || ||| ||||||||| ||||| | ||||| || |||||| Sbjct 3688 GGTCTCATGCCCGGCCTGACCTTTTCCAACGAGCTCATCTCTCGTGACGAGGGTCTGCAC 3747 Query 47277 ACCAACTTTGCCTGTCTCT---ACT-ACAACACTAGAGTCGATCAA--AAGTTGGACGTG 47330 ||| |||||||||| || | ||| || | | ||| || | | || ||| ||| Sbjct 3748 ACCGACTTTGCCTGCCTGTTGCACTCCCACCTCAAGAACCGCGCCAGCAA---GGAGGTG 3804 Query 47331 CCCACCGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAG 47390 || | ||||| | |||| || ||| |||||| ||||| || ||||| Sbjct 3805 ------ATCCGTGACATCATCACCGATGCTGTCCGAATTGAGCAAGAGTTCTTGACCGAG 3858 Query 47391 GCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTT 47450 ||||| ||| | | |||| |||||| | | |||||| |||||||||| ||| Sbjct 3859 GCTCTCCCCTGCGCCCTGCTGGGCATGAACTCCAACTTGATGAAGCAGTACATCGAGTTT 3918 Query 47451 GTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTACCACACCGAGAATCCA 47510 || || ||||||||||| ||| || | ||||| ||| | | || || Sbjct 3919 GTTGCTGACCGCCTGCTTGTTGCTCTCGGCAACGAGAAGATCTACAAGTCTTCCAACCCC 3978 Query 47511 TTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTC 47570 || || |||||| | |||||||| || | |||||||||||||| || |||||||| || Sbjct 3979 TTTGACTTTATGGAGAACATTTCTCTTGGTGGCAAGACCAACTTCTTTGAGAAGCGTGTT 4038 Query 47571 GGCGAATA 47578 | ||| || Sbjct 4039 GCCGACTA 4046 >seq1 Length=17084797 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | |||| |||| || | |||||||| || || || ||||| ||| Sbjct 1761287 GCACCACCACGCAGGCGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCG 1761228 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 | || ||||| ||| || ||||| || |||||| |||||||||||||||| || || Sbjct 1761227 CTCAGGGTGCGGCCATCCTCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGG 1761168 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || ||||||||||||||| ||| || ||||| | |||| |||||| | | ||| Sbjct 1761167 GGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCC 1761108 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || | ||| | ||| || || || || || || || ||||||||||| Sbjct 1761107 ACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 1761058 Score = 129 bits (142), Expect = 6e-25 Identities = 146/193 (76%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 126922 CTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTA 126981 ||| || || || ||||| |||| || |||||| || || ||||| || |||||| | Sbjct 3411911 CTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGACCGTCTTCCAGCTGCTTACCAGCGAA 3411970 Query 126982 GATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTT 127040 |||||| |||||||| || ||||| |||||||||||||| ||| || ||||| ||| Sbjct 3411971 GATCAAGCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCTTGGATCTTGGACTTGACGTT 3412030 Query 127041 GTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTA 127100 | |||| ||| || | | ||| || |||| ||| | || ||||||||||| || || | Sbjct 3412031 G-TCGATGGTATCAGAAGACTCCACCTCGAGGGTGATAGTCTTGCCGGTCAGGGTCTTGA 3412089 Query 127101 CAAAAATCTGCAT 127113 |||| || ||||| Sbjct 3412090 CAAAGATTTGCAT 3412102 Score = 107 bits (118), Expect = 2e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 126922 CTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTA 126981 ||| || ||||| ||||| |||| || ||||| || || ||||| || ||||| | Sbjct 3412139 CTCCTTCTGAATGTTGTAGTCGCTCAAAGTGCGGCCGTCCTCAAGCTGCTTGCCAGCAAA 3412198 Query 126982 GATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTG-CTTGAGTT 127040 ||| | ||||||||||| || || || |||||||| ||| ||| | | || ||||| | Sbjct 3412199 GATAAGACGCTGCTGATCCGGGGGGATACCCTCCTTATCC-TGAATCTTTGACTTGACAT 3412257 Query 127041 GTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTA 127100 |||| ||| || | | ||| || |||| ||| | || ||||| ||||| || || | Sbjct 3412258 TGTCGATGGTATCAGAAGACTCCACCTCGAGGGTGATAGTCTTGCCAGTCAGGGTCTTGA 3412317 Query 127101 CAAAAATCTGCAT 127113 | ||||||||||| Sbjct 3412318 CGAAAATCTGCAT 3412330 Score = 100 bits (110), Expect = 3e-16 Identities = 133/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| || ||||| ||||| ||| | || || ||| || ||||| || ||| Sbjct 3412362 GTAGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCAAGCTGCTTACCA 3412421 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||| | ||||||||| || ||||| ||||||||||||||| ||| || ||| Sbjct 3412422 GCGAAGATGAGTCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTTC 3412481 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| ||| || | | ||| || |||| ||| | || || ||||| || || Sbjct 3412482 ACATTGTCGATGGTATCAGAAGACTCCACCTCGAGGGTGATGGTCTTTCCGGTGAGGGTC 3412541 Query 127097 TTTAC 127101 || || Sbjct 3412542 TTGAC 3412546 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | |||||||| || || || ||||| ||| | Sbjct 3412618 CCACCACGAAGGCGGAGAACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAC 3412677 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || || || || || || ||||| |||| | |||||||| || ||||| Sbjct 3412678 AGAGTTCGGCCGTCCTCGAGTTGCTTGCCAGCAAAGATAAGACGCTGCTGGTCAGGAGGG 3412737 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || |||||||||||| || || ||| | | |||| |||||| | ||| || Sbjct 3412738 ATACCCTCCTTGTCCTGAATCTTGGACTTCACATTGTCGATGGTGTCGGATGACTCCACC 3412797 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | ||| | || || |||||||| || || || || || |||||| Sbjct 3412798 TCAAGGGTGATAGTCTTACCGGTCAGGGTCTTGACGAAGATTTGCATG 3412845 >seq47 Length=144723 Score = 95.1 bits (104), Expect = 1e-14 Identities = 129/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || || || ||||| ||| || || || ||| || ||||| || ||||| ||||| Sbjct 138396 TTCTGGATGTTGTAGTCGGACAGGGTTCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATC 138455 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 ||||||||||| || || || ||||||||||||||| ||| || ||||| | ||| Sbjct 138456 AATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 138515 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 | ||||| | |||||| || | ||| | || ||||| ||||| || || || ||| Sbjct 138516 ATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAA 138575 >seq93 Length=305044 Score = 86.0 bits (94), Expect = 6e-12 Identities = 127/179 (71%), Gaps = 1/179 (1%) Strand=Plus/Plus Query 146037 GTCTACGAGGGCCTTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCG 146096 ||| || ||| |||||| || | ||||||| ||||| ||||||||||| || || || Sbjct 224181 GTCGACCAGGTCCTTGAGAAGCCAAGGGTTGACAACCTGGAACTCGCCGGCAAGGACACG 224240 Query 146097 CCTCAGATACACGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGC 146156 | | | || | |||| |||| | |||||||| |||| ||||| || || ||||| | Sbjct 224241 GCGCTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCATTGTTGCCCAGGATCTGGGA 224300 Query 146157 CGTCGTAGCGGTAGGCATGTACGCCACCAGCAAAGAGTTTCTCACGCCGTG-TCTTTGA 146214 || | || || ||||| || || ||||| ||| | ||| ||||| || |||| Sbjct 224301 AGTGCTGGCAGTTGGCATAGGGGCAACGAGCAAGCTGTTGCGCACACCGTGCTCCTTGA 224359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475500164017680