Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001835465.1_202016-10-24] 107 sequences; 45,820,083 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq93 214 2e-50 seq97 127 3e-24 >seq93 Length=305044 Score = 214 bits (236), Expect = 2e-50 Identities = 950/1488 (64%), Gaps = 31/1488 (2%) Strand=Plus/Plus Query 115864 TTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGC 115923 |||||||| ||||| || || ||| || | | | |||||||||| ||||| ||| Sbjct 224209 TTGACAACCTGGAACTCGCCGGCAAGGACACGGCGCTGGTAGATGTTGGAGGTGTAGGGC 224268 Query 115924 TCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATG 115983 || |||||||||||||| |||| ||| |||| ||| ||| || ||||| || || | | Sbjct 224269 TCGAAGCACTCATTGTTGCCCAGGATCTGGGAAGTGCTGGCAGTTGGCATAGGGGCAACG 224328 Query 115984 AGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTC---G 116040 || | ||||||||| | ||| | || | || | |||||||| | |||||| || Sbjct 224329 AGCAAGCTGTTGCGCACACCGTGCTCCTTGATCTGCTCCTTGAGAGAGTCCCACTCCCAC 224388 Query 116041 TAGT-TGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGG 116099 ||| ||| | || | |||||||| || || || ||||| || | || || || Sbjct 224389 AAGTCGGAG----GGCTTGACATCCCACATGTCGAATTGAAGGATGCCCTCAGATGCAGG 224444 Query 116100 CGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAG 116159 ||||||| |||| | || |||||||| |||| || | || ||||| || Sbjct 224445 TGATCCCTTGAATGATTGGTAGGGGCCCTCGACCTTGGCAATCTCCATAGAAGCCTCAAG 224504 Query 116160 GGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATC 116219 ||| ||||| || ||||||||||| || | |||| | ||||| || || Sbjct 224505 GGCAGCGTGGTAGATTGTCTCAAAGATCTGCTTGTTCAGCTCGCGAGCCTCAGGAGACTC 224564 Query 116220 AAACGCGAGACGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGG 116279 ||| | | || || || |||| || ||||| |||||||| | || || || Sbjct 224565 AAAAGGCATGCGCAGGGCAAGGAAAGCATCAGCAAGACCCTGGACACCAACACCGATAGG 224624 Query 116280 GCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAAC 116339 | || | ||| || || || || || || || || ||| ||| |||| Sbjct 224625 TCTGTGACGCATGTTGCTGTTACGGGCCTCCTGGACAGGGTAGTGGTTCACATCAATAAT 224684 Query 116340 CCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACT 116399 | | || || || | || ||||| |||| ||| |||||||| | | ||| | | Sbjct 224685 CTTGTTCAGGTTACGGACAACCACCTTGGTGACTTCGTGAAGCTTCTTAAAGTCATAGCA 224744 Query 116400 GCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGT 116459 | | | | |||||| ||| ||||| | || |||| || || |||| Sbjct 224745 CCCTTCGTTGTAGTCGACATAGGCAGGGAGGGCCAAAGAGGCCAAGTTGCAGACAGCAAC 224804 Query 116460 CTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCC 116519 |||||| || |||||| ||||| || || || | || || || ||||| || Sbjct 224805 CTCATCAGGGGCACAGTACTCAATAATCTCAGTGCAGAGGTTAGAGCTGCGGATGGTACC 224864 Query 116520 CAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCC 116579 || |||||| || || ||| ||| || |||||||||||||| | || | || Sbjct 224865 CAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTAGAGCATGAAGGGGTTGCC 224924 Query 116580 CGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAGTGGCGT 116638 ||||| || |||| | || || | | ||| | | || | || | | ||| | Sbjct 224925 AGTCTCGGTCTGGGCTTCCAGGATGGAATACCACAGCTTCTG-AGCGCGGATAGTCTTGC 224983 Query 116639 TGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGC-C 116697 | || ||||||| ||||||||| || | ||||| ||||| || ||| ||| Sbjct 224984 GACCACGTCCCTCCTTCTCGTACTTCTCATACAAAGCCTCGAACTCCTC-GCCATAGCAG 225042 Query 116698 TCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCA--CCCTCCTCAA 116755 || | || || || || | || || | ||| | ||| | ||| || ||||| Sbjct 225043 TCAGCAAGGCCAGGGCACTCGTTGGGGCACATGAGCGTCCA--GTCCAAGTTCTTCTCAA 225100 Query 116756 CCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTT 116815 | |||||||||||||| || || |||||||| || ||| | || ||| || | | Sbjct 225101 CACGCTTCATGAAGAGATCGGGAATCCAGAGAGCAAGGAATAAGTCGCGAGCACGGACCT 225160 Query 116816 CTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTT 116875 | || | || || || || | || | || || | || ||| |||||||| || | Sbjct 225161 CCTCCTTACCGTGGTTCTTGCGGAGATCAAGGAACTCAAAGACATCAGCGTGCCATGGCT 225220 Query 116876 CCAGGTACACCGCGATTG-AC-----CCCTTGCGACGACCAGCCTGGTTTACATACCTCG 116929 ||||||| | || | | || | |||| ||| |||||| || || || | Sbjct 225221 CCAGGTAGATGGCAAAGGCACCAGGACGCTTG---TTGCCACCCTGGTCGACGTATCTGG 225277 Query 116930 CCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCC 116989 | || ||| || || |||||||| ||||||||||| | || || || || ||| Sbjct 225278 CAGTGTTGTTGAAGACTCGAAGCATGGGAATGATACCGTTGGAAGTACCGTTGGTGCCCG 225337 Query 116990 GAATACGAGACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACT 117049 ||| ||| | |||| | || ||||| || || || || || || ||| || Sbjct 225338 CAATGTAAGAACCGGTGGCACGGATGCGGTGGACGTTCAAGCCGATGCCGCCAGCCATCT 225397 Query 117050 TTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTAT 117109 | || || || ||| | | ||| || | ||||| || || || || |||| Sbjct 225398 TGGAAATCATGGCACACGTCTTCAGAGTGTCATAGATACCCTCAATGCTATCGTCCTTCA 225457 Query 117110 TTGCGATGAGGAAGCAGCTCGACATTTGTGGCCT-TGGTGTACCAGCGTTGAAGAGGGTT 117168 | | | | |||||| |||| || ||||| || |||||||||||||||||||| Sbjct 225458 TGTCAACCAAGAAGCATGAAGACAGCTG-GGCCTGCGGGGTACCAGCGTTGAAGAGGGTG 225516 Query 117169 GGTGTCGCGTGGATGAACATACCTTG--GGACATCTTATCGTAGGTCTCCAAGACAGAGG 117226 || | |||||| ||| | | |||| ||||| | ||| ||||||| |||| Sbjct 225517 GGGGAGGCGTGGGTGA--AGAACTTGCTCGACATGAGGTGGTATGTCTCCAGGACACGCT 225574 Query 117227 GAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAACATGTATTGGGGTGTTTCCA 117286 |||||| || || || || | | || ||||||| ||||| || ||| || | Sbjct 225575 CAATGTCGTCTCCCCAGATGCCAACAGCCACTCGCATAATCATGTGCTGTGGTCGCTCAA 225634 Query 117287 TCAGGATACCATCGAGCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGA 117334 | | ||||| ||| || ||||||| | |||||| ||||||| Sbjct 225635 CAATCTTGCCATCAAGCTTCAGGAGGTATGACCGCTCCAAAGTCTTGA 225682 >seq97 Length=261666 Score = 127 bits (140), Expect = 3e-24 Identities = 344/521 (66%), Gaps = 9/521 (2%) Strand=Plus/Minus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || ||| |||||||||||||| |||||||| || || || ||| ||| || Sbjct 3758 GCAAAGTCGGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGGCCG 3699 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 ||||||||||| |||||||| | |||||| || | ||| | ||| ||||||||| Sbjct 3698 GGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGATGCAAAGGCGCCGCTGAAGAAGATA 3639 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAAC 127699 ||||| || || || |||| || |||| |||||||| | ||| | | | Sbjct 3638 CCCTCGACGGCAGCAAAGGCAACCAGGCGCTGAGCAAAGGAAGAGTTCTTGTCCTGGATC 3579 Query 127700 CACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAG 127759 ||||| || ||||| | ||||| || || || |||| |||| || || | ||| Sbjct 3578 CACTTGATGGCCCAGTCAGCCTTCTTGCGAATGCAAGGGATAGTCTCAATGGCGTTGAAG 3519 Query 127760 AGTTCCTT--CTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTT 127817 || | || | ||| | || |||||||| | || ||||| || || || | Sbjct 3518 AGATAGTTGCGCTGGCTGTT--CTCCTTGATGTAGGTGTCGATGAGCAGGGAGTAGGTCT 3461 Query 127818 CGCCGTGGACCAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATC 127876 || ||||| | | ||| || | ||| | ||||||| | || || ||| ||| Sbjct 3460 CGGAGTGGATGTTCTCCATCAT-GATCTGGAAGCCGTAGAAGCATCGAGCCTCGGGGATC 3402 Query 127877 TGTACCTCATCGGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCA 127936 || ||||| || || | | ||||| ||||| ||||| || | ||| Sbjct 3401 TGGACCTCGCCGCTGAAGCGCTCGACCAGGTTCTCGTTGACAATGCCATCAGAGGCGGCA 3342 Query 127937 AAAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAG 127993 || || |||||||| | ||||| | || || | ||||||| || | |||||| Sbjct 3341 AAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTCCAG 3282 Query 127994 TCGTCGAGATCCTTTGAGAGATCTACCTCCTCCGCAGTCCA 128034 |||| |||||||| || || || | ||| || || ||||| Sbjct 3281 TCGTGCAGATCCTTGGACAGGTCAATCTCTTCGGCGGTCCA 3241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613506379434120