Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001835465.1_202016-10-24] 107 sequences; 45,820,083 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq97 224 2e-53 seq93 132 8e-26 >seq97 Length=261666 Score = 224 bits (248), Expect = 2e-53 Identities = 578/865 (67%), Gaps = 29/865 (3%) Strand=Plus/Minus Query 159628 CTTCTTGTATTGCGACACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGA 159687 ||||| ||| | | ||| |||||| || |||||||||||||| | | || || Sbjct 4053 CTTCTGGTAGTCGGCAACACGCTTCTCAAAGAAGTTGGTCTTGCCACCAAGAGAAATGTT 3994 Query 159688 TTCCATGAACCCGAATGGGTTCTTC-ACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCA 159746 ||||| || | || ||||| || || ||| |||| |||||||| | | Sbjct 3993 CTCCATAAAGTCAAAGGGGTTGGAAGACTTG-TAGATCTTCTCGTTGCCGAGAGCAACAA 3935 Query 159747 GCAACCTGTCTGCCACAAATTCGATGTAGCTACA-CATCTGCTCACAGTTGATCCCCAGC 159805 ||| | ||| || ||||| |||||||| || | |||| | |||| || |||||| Sbjct 3934 GCAGGCGGTCAGCAACAAACTCGATGTA-CTGCTTCATCAAGTTGGAGTTCATGCCCAGC 3876 Query 159806 AGCCTAACGGGGAGCGCTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACA 159865 || |||||| || || | || ||||| | |||||| ||| || ||||| | Sbjct 3875 AGGGCGCAGGGGAGAGCCTCGGTCAAGAACTCTTGCTCAATTCGGACAGCATCGGTGATG 3816 Query 159866 ATCTGCGAGA-CACGTTCGTAC---CCCGG--CTTGCCCAAAATGTGGTCCTTAAACAGG 159919 || | || ||| | | | | | ||| |||| | |||| | |||||| Sbjct 3815 ATGTCACGGATCACCTCCTTGCTGGCGCGGTTCTTG------AGGTGGGAGTGCAACAGG 3762 Query 159920 AGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATG 159979 || ||||||||| |||||| |||||||| |||||||||| ||||||||| | | | Sbjct 3761 ---CAGGCAAAGTCGGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTC 3705 Query 159980 AGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAA 160039 ||||| ||||||| || ||| |||||||| || |||| ||||| || ||||| || Sbjct 3704 AGGCCGGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGATGCAAAGGCGCCGCTGAAG 3645 Query 160040 AAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCA 160099 ||||| ||||| ||||| ||||| || || || | || | |||| || | ||| |||| Sbjct 3644 AAGATACCCTCGACGGCAGCAAAGGCAACCAGGCGCTGAGCAAAGGAAGAGTTCTTGTCC 3585 Query 160100 TGGGTCCACCTTTTGGCCCATTCAGCCTTCTTTGCG-ATGCACGGCATGCGCTCGACGGC 160158 ||| ||||| | ||||||| ||||||||| ||||| ||||| || || ||| | ||| Sbjct 3584 TGGATCCACTTGATGGCCCAGTCAGCCTTC-TTGCGAATGCAAGGGATAGTCTCAATGGC 3526 Query 160159 GTTAAACA---ATCTGTCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGA 160215 ||| || | | || ||| ||| |||||||| || | || ||| || Sbjct 3525 GTTGAAGAGATAGTTGCGCTGGCTGTTC---TCCTTGATGTAGGTGTCGATGAGCAGGGA 3469 Query 160216 GTACATTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTC 160275 ||| | || | ||| | || || || ||||| ||| |||||| || ||||| Sbjct 3468 GTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGAGCCTC 3409 Query 160276 CAGATACTGCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGC 160335 | ||| ||||| |||| | | |||| || | || || | || || | Sbjct 3408 GGGGATCTGGACCTCGCCGCTGAAGCGCTCGACCAGGTTCTCGTTGACAATGCCATCAGA 3349 Query 160336 GGCCGCAAAGAAAGCCAACACGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTT 160395 ||| |||||||| |||| | |||||||||||| | ||||||| | ||| || | || Sbjct 3348 GGCGGCAAAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTT 3289 Query 160396 TTCCCAGT-GTGTCACGTCTTGGGCCAAATCAACCTCTTCCGCGCTCCAATTGGCAGCCT 160454 | ||||| ||| || || | || || |||| |||||| ||| |||| || ||||| Sbjct 3288 GTTCCAGTCGTG-CAGATCCTTGGACAGGTCAATCTCTTCGGCGGTCCAGAAGGAAGCCT 3230 Query 160455 GAGCAGTTTTGTACATGGCCCAGAT 160479 || | |||||||| |||||| Sbjct 3229 CGGCCTTCTTGTACATTTGCCAGAT 3205 >seq93 Length=305044 Score = 132 bits (146), Expect = 8e-26 Identities = 382/575 (66%), Gaps = 12/575 (2%) Strand=Plus/Plus Query 203843 TCCACCGTGAACTGAATGGCGTTCA-CGGCAGGCCTGCTT-CTCAGATAGTACATGCCGG 203900 || || |||||||| |||| || || | || |||||| | | |||||||||||||||| Sbjct 223864 TCAACGGTGAACTGGATGG-GTGCAGCTGC-GGCCTGGGTACGAAGATAGTACATGCCGG 223921 Query 203901 TCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGT 203960 |||| || || || ||| || | ||||||| | | |||| || |||||| Sbjct 223922 TCTTGAGACCAAGCTTCCAGCCAGTGAAGTGCATGCTGGTAATCTTGCCCATTGTGGGGT 223981 Query 203961 CGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCCA 204020 | |||||| |||||||| |||||| ||||| ||||||| | || || || |||| Sbjct 223982 CCTTCATGTGGATGTTCAGGGACTGGGACTGGTCAATGAAAGCACCACGGTCGGCCGCCA 224041 Query 204021 TATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTGTGTT 204080 | | || ||| ||| ||||||||||| || |||||| ||| | || | | | Sbjct 224042 TCTGGACAATTTGGCGCTGAGAAATCTCCCAGACGGTCTTGTACAATGCCTTGATATCCT 224101 Query 204081 GAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTCATCCTCGTC 204139 || | | | | || ||| || |||||||| || || || | | || || | Sbjct 224102 CGGGGATGT-TGGGGATGTTCTGAATGGAGCCGTTCTCAGCAATAATACGGTTCTTCATG 224160 Query 204140 TCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGATCTGA 204199 | || ||| | ||| || ||| ||| | || ||||||| | ||| Sbjct 224161 GCATCGGACCAGAGGCCAGTGTCGACCAGGTCCTTGAGAAGCCAAGGGTTGACAACCTGG 224220 Query 204200 AAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCTCG 204259 || || |||| || || | || | | | |||| |||| | || ||||| ||| Sbjct 224221 AACTCGCCGGCAAGGACACGGCGCTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCA 224280 Query 204260 TTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGTTG 204319 |||||||| | ||||| | |||||||| || ||||| || || | ||||| | |||| Sbjct 224281 TTGTTGCCCAGGATCTGGGAAGTGCTGGCAGTTGGCATAGGGGCAACGAGCAAGCTGTTG 224340 Query 204320 CGCACACCGTATTTTTGGACCCTGC-GCTTCAGAGAGGTCCAGTCGTGCA--TCGCACTG 204376 |||||||||| | | || |||| ||| |||||| ||| || || ||| | | Sbjct 224341 CGCACACCGTGCTCCTTGA-TCTGCTCCTTGAGAGAGTCCCACTCCCACAAGTCGGA--G 224397 Query 204377 GGTTTCACGCCCCACATGTCGAACTGAAAGATGCC 204411 || || || ||||||||||||| |||| |||||| Sbjct 224398 GGCTTGACATCCCACATGTCGAATTGAAGGATGCC 224432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795154136479920