Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001835465.1_202016-10-24] 107 sequences; 45,820,083 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq97 282 4e-71 seq1 123 2e-23 seq47 102 8e-17 >seq97 Length=261666 Score = 282 bits (312), Expect = 4e-71 Identities = 569/829 (69%), Gaps = 25/829 (3%) Strand=Plus/Minus Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAG-GAAATGAGCGTCATAAAATCCAAGGGGTT 132683 |||||||| || || || || || ||||| |||||| | |||||| || |||||||| Sbjct 4031 TTCTCAAAGAAGTTGGTCTTGCCA-CCAAGAGAAATGTTCTCCATAAAGTCAAAGGGGTT 3973 Query 132684 GGCTGTGTTGTAGTGCTT---GGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAA 132740 || | |||||| ||| | |||||| || | || ||||| | ||| || || || Sbjct 3972 GGAAGACTTGTAGATCTTCTCGTTGCCGAG-AG--CAACAAGCAGGCGGTCAGCAACAAA 3916 Query 132741 CTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGA-CGCACCGGCAGCGCTT 132799 ||||||||| ||| ||| | | | || | |||||||| |||| || || || | Sbjct 3915 CTCGATGTACTGCTTCATCAAGTTGGAGTTCATGCCCAGCAGGGCGCAGGGG-AGAGCCT 3857 Query 132800 CGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCG 132859 |||| | || |||||| || ||| || ||||||| ||| || | | | || Sbjct 3856 CGGTCAAGAACTCTTGCTCAATTCGGACAGCATCGGTGATGATGTCACGGATCACCTCCT 3797 Query 132860 CGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCT 132919 ||| | || | | | || | || || ||| ||||||||| |||| |||| Sbjct 3796 TGCTGGCGCGGTTCTTGAGGTGGGAGTGCAACAGGCAGGCAAAGTCGGTGTGCAGACCCT 3737 Query 132920 CGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGA 132979 |||| | || ||||| |||||| || |||| |||||||||||| || || || |||| Sbjct 3736 CGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGGCCGGGCATGAGACCTCGCTTCTTGA 3677 Query 132980 GCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCA 133039 |||| || |||| || || ||| ||||||| ||||||||||| || || || | Sbjct 3676 GCCAGAAGATGGATGCAAAGGCGCCGCTGAAGAAGATACCCTCGACGGCAGCAAAGGCAA 3617 Query 133040 CCAGGCGCTCGCCGAACGTGGC-TTCTT-TGCTGGCGATCCAGCGCAGCGCCCATTCGGC 133097 ||||||||| | || | | ||||| | |||| ||||| | ||||| || || Sbjct 3616 CCAGGCGCTGAGCAAAGGAAGAGTTCTTGTCCTGG--ATCCACTTGATGGCCCAGTCAGC 3559 Query 133098 CTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGA 133157 ||| | | ||| || || || || |||||||| || | | |||| | || | Sbjct 3558 CTTCTTGCGAATGCAAGGGATAGTCTCAATGGCGTTGAAGAGAT--AGTTGCGCTGGCT- 3502 Query 133158 GGAACGC----ACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCA 133213 | | | | ||||||||||||||| || || | || ||||| | |||||||| Sbjct 3501 -GTTCTCCTTGATGTAGGTGTCGATGAGCAGGGAGTAGGTCTCGGAGTGGATGTTCTCCA 3443 Query 133214 TGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAAC 133273 | ||| || |||||||| ||||| || |||||| | ||| || || ||| | Sbjct 3442 TCATGATCTGGAAGCCGTAGAAGCATCGAGCCTCGGGGATCTGGACCTCGCCGCTGAAGC 3383 Query 133274 GCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCT 133333 |||||||||| || |||||||| ||||| || |||||| || |||||||| | ||| Sbjct 3382 GCTCGACCAGGTTCTCGTTGACAATGCCATCAGAGGCGGCAAAGAAGGCCAGGATGTGAG 3323 Query 133334 TGATGAAATGGCGCTCGTTGTCGTTCAAGCG---CTCCCAGTCGCGCGTGTCCTTGGACA 133390 |||||| | ||||| ||||||| ||| | ||||||| || |||||||||| Sbjct 3322 AGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTCCAGTCGTGCAGATCCTTGGACA 3263 Query 133391 GGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 |||| | ||| ||| ||||||| || || |||||||| || |||||||| Sbjct 3262 GGTCAATCTCTTCGGCGGTCCAGAAGGAAGCCTCGGCCTTCTTGTACAT 3214 >seq1 Length=17084797 Score = 123 bits (136), Expect = 2e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || || |||||||| || || |||||| | || || ||| | Sbjct 1761055 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 1761114 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 |||||| | | | | | || || |||| ||||| ||||| |||||| | ||| Sbjct 1761115 TCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGAC 1761174 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| | || | ||| || || |||||||| || | |||||||| | ||||||| Sbjct 1761175 CAGCAGCGATTGATCTTCGCTGGTAAGCAGCTGGAGGATGGCCGCACCCTGAGCGACTAC 1761234 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||||| ||||| | || || || |||| ||||| Sbjct 1761235 AACATCCAGAAGGAGTCTACCCTCCACCTGGTCCTGCG 1761272 Score = 116 bits (128), Expect = 4e-21 Identities = 159/217 (73%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || || || ||||| || |||||| |||| || ||| | | Sbjct 3412102 ATGCAAATCTTTGTCAAGACCCTGACCGGCAAGACTATCACCCTCGAGGTGGAGTCTTCT 3412043 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | |||| | || || |||| ||||| ||||| ||||| | ||||| Sbjct 3412042 GATACCATCGACAACG-TCAAGTCCAAGATCCAAGACAAGGAGGGCATTCCTCCTGACCA 3411984 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| | || | ||| || || |||||||| |||| |||||| | | ||||||||| Sbjct 3411983 GCAGCGCTTGATCTTCGCTGGTAAGCAGCTGGAAGACGGTCGCACCTTGAGCGACTACAA 3411924 Query 38423 CATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCG 38458 |||||| ||||| ||| || ||||| ||||| || || Sbjct 3411923 CATCCAGAAGGAGAGC-ACACTGCACTTGGTCCTTCG 3411888 Score = 93.3 bits (102), Expect = 4e-14 Identities = 129/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 38254 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGC 38313 |||| || || ||||| || || ||||||||| |||| || ||| | | || | | | Sbjct 3412548 TCGTCAAGACCCTCACCGGAAAGACCATCACCCTCGAGGTGGAGTCTTCTGATACCATCG 3412489 Query 38314 AAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCA 38373 | | | || || |||| ||||| ||||| ||||| | ||||| ||||| |||| Sbjct 3412488 ACAATGTGAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCTGACCAGCAGCGACTCA 3412429 Query 38374 TTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGG 38433 | | ||| || || ||||| || || | || |||||| |||||||||||| || |||| Sbjct 3412428 TCTTCGCTGGTAAGCAGCTTGAGGATGGCCGAACCCTCTCCGACTACAACATTCAGAAGG 3412369 Query 38434 A 38434 | Sbjct 3412368 A 3412368 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || || || || || || |||||| | || || ||| | || Sbjct 3412844 ATGCAAATCTTCGTCAAGACCCTGACCGGTAAGACTATCACCCTTGAGGTGGAGTCATCC 3412785 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || || || | ||||| ||||| || || | ||||| Sbjct 3412784 GACACCATCGACAATGTGAAGTCCAAGATTCAGGACAAGGAGGGTATCCCTCCTGACCAG 3412725 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | || ||||| || || || |||| || || || |||||||||| Sbjct 3412724 CAGCGTCTTATCTTTGCTGGCAAGCAACTCGAGGACGGCCGAACTCTGTCCGACTACAAC 3412665 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| ||||| | || || || ||||| || || Sbjct 3412664 ATCCAGAAGGAGTCTACTCTCCACTTGGTTCTCCG 3412630 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| || |||||| |||| || ||| | | Sbjct 3412330 ATGCAGATTTTCGTCAAGACCCTGACTGGCAAGACTATCACCCTCGAGGTGGAGTCTTCT 3412271 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | | || ||| || | || || ||||| || ||| | || || Sbjct 3412270 GATACCATCGACAATGTCAAGTCAAAGATTCAGGATAAGGAGGGTATCCCCCCGGATCAG 3412211 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | || ||||| ||||| || |||| ||||| | | |||||||||| Sbjct 3412210 CAGCGTCTTATCTTTGCTGGCAAGCAGCTTGAGGACGGCCGCACTTTGAGCGACTACAAC 3412151 Query 38424 ATCCAAAAGGA 38434 || || ||||| Sbjct 3412150 ATTCAGAAGGA 3412140 >seq47 Length=144723 Score = 102 bits (112), Expect = 8e-17 Identities = 131/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || || |||||||| ||||||||| | || |||||| || |||||| | Sbjct 138574 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACGATC 138515 Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | | | || || |||| ||||| ||||| |||||| | ||||| ||||| | Sbjct 138514 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGATTG 138455 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | || ||||| ||||| || || | || ||||| ||||||||||||||| ||| Sbjct 138454 ATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGAACCCTGTCCGACTACAACATCCAGAAG 138395 Query 38433 G 38433 | Sbjct 138394 G 138394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172131018880