Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001835465.1_202016-10-24] 107 sequences; 45,820,083 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq41 100 2e-15 >seq41 Length=363786 Score = 100 bits (110), Expect = 2e-15 Identities = 108/142 (76%), Gaps = 1/142 (1%) Strand=Plus/Plus Query 668849 TTAAGAGGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAACGTGTCGATATGTCT 668908 ||||| |||||||| |||||| | |||| || ||||||||||| ||||| || | ||| Sbjct 175944 TTAAG-GGTAAAGAGGGTCGTCTGCGAGGCAACTTGATGGGAAAGCGTGTTGACTTTTCT 176002 Query 668909 GCACGTACAGTTATTACTTCTGATCCCAATATTGCTCTCAATGAAGTTGGTGTTCCTCTT 668968 |||||||| ||||| || ||| | ||| | | || | |||||||| ||||||| | Sbjct 176003 GCACGTACCGTTATCACGGGAGATGCTAATTTGTCCCTTCACGAAGTTGGCGTTCCTCGT 176062 Query 668969 ATTATTGCTAAAAATCTTACTT 668990 | |||||||| | ||| |||| Sbjct 176063 AGTATTGCTAGGACTCTGACTT 176084 Score = 89.7 bits (98), Expect = 4e-12 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 671645 GGTCTTGGACCTTTTGAATTTTTCTTCCAAGTAATGGCAGGTCGTGAAGGTATTATTAAT 671704 |||||| |||| |||||| || ||||| | ||||| |||||||||||| | ||| || Sbjct 177374 GGTCTTACGCCTTCTGAATTCTTTTTCCACGCCATGGCTGGTCGTGAAGGTCTCATTGAT 177433 Query 671705 ACGGCTATTAAAACTGCTGATACTGGTTATATTCAAAGAAAACTTGTTAAAATGCTCGAA 671764 || || | || |||||||| || ||||||||||| ||| || || || || ||| Sbjct 177434 ACTGCCGTCAAGACTGCTGAAACAGGTTATATTCAGAGACGTCTCGTCAAGGCTCTGGAA 177493 Query 671765 GATATCAAACAAGAATATGATGGTACAGT 671793 ||| |||| |||| ||||| || || Sbjct 177494 GATCTCAATGCTCAATACGATGGAACTGT 177522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780817090307542