Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001835465.1_202016-10-24] 107 sequences; 45,820,083 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq96 253 3e-62 seq82 253 3e-62 seq1 253 3e-62 seq41 131 2e-25 seq93 104 3e-17 >seq96 Length=287210 Score = 253 bits (280), Expect = 3e-62 Identities = 471/689 (68%), Gaps = 8/689 (1%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||||||||||||||||||||| || || || || || | ||||| || |||||||| Sbjct 47310 TCGAAATCTTCACCACCCAAGTGGGTGTCACCGGCAGTGGACTTGACCTCGAAGATACCC 47251 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | |||||| | | | || ||||| || ||||||||||| || || || ||||| ||| Sbjct 47250 TCCTCAATGGTCAGGAGAGAGACATCGAAGGTACCACCACCGAGATCGAAGATGAGGACG 47191 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 || || | || ||||| || || ||||| ||||| || || || || || || Sbjct 47190 TTGCGCTCACCCTCGACCTTCTTGTCAAGGCCGTAGGCGATGGCAGCAGCGGTGGGCTCG 47131 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || || ||||| || ||| || || ||||| | || || || || || || || Sbjct 47130 TTGATGATACGCAGGACGTTAAGACCGGCAATGAGACCGGCGTCCTTGGTAGCCTGACGC 47071 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || ||||| |||||||| ||||| || | ||| |||| |||| | | ||||| Sbjct 47070 TGGCTGTCGTTGAAGTAGGCGGGGACAGTGATGACGGCGTTGTTGACGGTGGTTCCGAGG 47011 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCA 7816 || || || || | || ||| ||||| || | ||| || || ||||| || | | Sbjct 47010 TAGGACTCGGCAGTCTCACGCATCTTGGTCAGGATCATGGAGGAGATCTCCTCGGGGGTG 46951 Query 7817 AACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCAC-CGGG 7875 || ||| | || || || || ||||| || | | ||| || | ||| | | Sbjct 46950 AAGGTCTTCTTCTCGCCCTTGAACTCAACCTCGACGACGGGCTT----GGAGCCCTTGTC 46895 Query 7876 GATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCT 7935 ||| | ||| | | | | |||||||| | ||||||| ||| | |||||| | Sbjct 46894 GATGATCTTGAAGGGGAAGTGCTTCATATCAGCCTGGACCTCGGAGTCGGCAAACTTGCG 46835 Query 7936 TCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTT 7995 |||||| | ||||| || || || || ||||| | |||||||||||| |||||||| Sbjct 46834 TCCGATCAATCGCTTGGCGTCGAAGACGGTGTTCTGGGGGTTCATGGCGACCTGGTTCTT 46775 Query 7996 CGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGT 8055 ||||| || ||||| ||||| || | || || || || ||| |||| |||||||| Sbjct 46774 GGCCGCATCACCGATCAGACGCTC---GGTGTCGGTGAAGGCAACGAACGAAGGGGTCGT 46718 Query 8056 TCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCA 8115 ||| || || |||||||| || || || || ||||| | | ||| |||||||| Sbjct 46717 TCGGTTACCCTGGTCGTTGGCGATGATATCACATCGGTCCTCACGGAAGATACCGACGCA 46658 Query 8116 CGAATACGTTGTTCCTAAATCAATACCGA 8144 || ||||| || || | || ||||||| Sbjct 46657 AGAGTACGTAGTACCCAGGTCGATACCGA 46629 >seq82 Length=456978 Score = 253 bits (280), Expect = 3e-62 Identities = 471/689 (68%), Gaps = 8/689 (1%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||||||||||||||||||||| || || || || || | ||||| || |||||||| Sbjct 278625 TCGAAATCTTCACCACCCAAGTGGGTGTCACCGGCAGTGGACTTGACCTCGAAGATACCC 278566 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | |||||| | | | || ||||| || ||||||||||| || || || ||||| ||| Sbjct 278565 TCCTCAATGGTCAGGAGAGAGACATCGAAGGTACCACCACCGAGATCGAAGATGAGGACG 278506 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 || || | || ||||| || || ||||| ||||| || || || || || || Sbjct 278505 TTGCGCTCACCCTCGACCTTCTTGTCAAGGCCGTAGGCGATGGCAGCAGCGGTGGGCTCG 278446 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || || ||||| || ||| || || ||||| | || || || || || || || Sbjct 278445 TTGATGATACGCAGGACGTTAAGACCGGCAATGAGACCGGCGTCCTTGGTAGCCTGACGC 278386 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || ||||| |||||||| ||||| || | ||| |||| |||| | | ||||| Sbjct 278385 TGGCTGTCGTTGAAGTAGGCGGGGACAGTGATGACGGCGTTGTTGACGGTGGTTCCGAGG 278326 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCA 7816 || || || || | || ||| ||||| || | ||| || || ||||| || | | Sbjct 278325 TAGGACTCGGCAGTCTCACGCATCTTGGTCAGGATCATGGAGGAGATCTCCTCGGGGGTG 278266 Query 7817 AACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCAC-CGGG 7875 || ||| | || || || || ||||| || | | ||| || | ||| | | Sbjct 278265 AAGGTCTTCTTCTCGCCCTTGAACTCAACCTCGACGACGGGCTT----GGAGCCCTTGTC 278210 Query 7876 GATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCT 7935 ||| | ||| | | | | |||||||| | ||||||| ||| | |||||| | Sbjct 278209 GATGATCTTGAAGGGGAAGTGCTTCATATCAGCCTGGACCTCGGAGTCGGCAAACTTGCG 278150 Query 7936 TCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTT 7995 |||||| | ||||| || || || || ||||| | |||||||||||| |||||||| Sbjct 278149 TCCGATCAATCGCTTGGCGTCGAAGACGGTGTTCTGGGGGTTCATGGCGACCTGGTTCTT 278090 Query 7996 CGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGT 8055 ||||| || ||||| ||||| || | || || || || ||| |||| |||||||| Sbjct 278089 GGCCGCATCACCGATCAGACGCTC---GGTGTCGGTGAAGGCAACGAACGAAGGGGTCGT 278033 Query 8056 TCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCA 8115 ||| || || |||||||| || || || || ||||| | | ||| |||||||| Sbjct 278032 TCGGTTACCCTGGTCGTTGGCGATGATATCACATCGGTCCTCACGGAAGATACCGACGCA 277973 Query 8116 CGAATACGTTGTTCCTAAATCAATACCGA 8144 || ||||| || || | || ||||||| Sbjct 277972 AGAGTACGTAGTACCCAGGTCGATACCGA 277944 >seq1 Length=17084797 Score = 253 bits (280), Expect = 3e-62 Identities = 471/689 (68%), Gaps = 8/689 (1%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||||||||||||||||||||| || || || || || | ||||| || |||||||| Sbjct 16665658 TCGAAATCTTCACCACCCAAGTGGGTGTCACCGGCAGTGGACTTGACCTCGAAGATACCC 16665717 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | |||||| | | | || ||||| || ||||||||||| || || || ||||| ||| Sbjct 16665718 TCCTCAATGGTCAGGAGAGAGACATCGAAGGTACCACCACCGAGATCGAAGATGAGGACG 16665777 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 || || | || ||||| || || ||||| ||||| || || || || || || Sbjct 16665778 TTGCGCTCACCCTCGACCTTCTTGTCAAGGCCGTAGGCGATGGCAGCAGCGGTGGGCTCG 16665837 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || || ||||| || ||| || || ||||| | || || || || || || || Sbjct 16665838 TTGATGATACGCAGGACGTTAAGACCGGCAATGAGACCGGCGTCCTTGGTAGCCTGACGC 16665897 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || ||||| |||||||| ||||| || | ||| |||| |||| | | ||||| Sbjct 16665898 TGGCTGTCGTTGAAGTAGGCGGGGACAGTGATGACGGCGTTGTTGACGGTGGTTCCGAGG 16665957 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCA 7816 || || || || | || ||| ||||| || | ||| || || ||||| || | | Sbjct 16665958 TAGGACTCGGCAGTCTCACGCATCTTGGTCAGGATCATGGAGGAGATCTCCTCGGGGGTG 16666017 Query 7817 AACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCAC-CGGG 7875 || ||| | || || || || ||||| || | | ||| || | ||| | | Sbjct 16666018 AAGGTCTTCTTCTCGCCCTTGAACTCAACCTCGACGACGGGCTT----GGAGCCCTTGTC 16666073 Query 7876 GATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCT 7935 ||| | ||| | | | | |||||||| | ||||||| ||| | |||||| | Sbjct 16666074 GATGATCTTGAAGGGGAAGTGCTTCATATCAGCCTGGACCTCGGAGTCGGCAAACTTGCG 16666133 Query 7936 TCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTT 7995 |||||| | ||||| || || || || ||||| | |||||||||||| |||||||| Sbjct 16666134 TCCGATCAATCGCTTGGCGTCGAAGACGGTGTTCTGGGGGTTCATGGCGACCTGGTTCTT 16666193 Query 7996 CGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGT 8055 ||||| || ||||| ||||| || | || || || || ||| |||| |||||||| Sbjct 16666194 GGCCGCATCACCGATCAGACGCTC---GGTGTCGGTGAAGGCAACGAACGAAGGGGTCGT 16666250 Query 8056 TCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCA 8115 ||| || || |||||||| || || || || ||||| | | ||| |||||||| Sbjct 16666251 TCGGTTACCCTGGTCGTTGGCGATGATATCACATCGGTCCTCACGGAAGATACCGACGCA 16666310 Query 8116 CGAATACGTTGTTCCTAAATCAATACCGA 8144 || ||||| || || | || ||||||| Sbjct 16666311 AGAGTACGTAGTACCCAGGTCGATACCGA 16666339 >seq41 Length=363786 Score = 131 bits (144), Expect = 2e-25 Identities = 360/545 (66%), Gaps = 15/545 (3%) Strand=Plus/Minus Query 7244 AGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAA 7303 || ||||| ||||| |||||||| |||| | ||| || | || ||| | | || Sbjct 164210 AGCTCCTCGAAACGAGCACGGGTGATGGTCATGGTGAAGTCCTCACCCTCGAAGAGAGAG 164151 Query 7304 TCAATTTCAATGGTTGTTTGTGC--CGTCGAAGATAACGTTCGCTTTGCGCGCTCACACG 7361 ||||| |||||||| | || || || | ||| || ||||| || ||||| || | Sbjct 164150 TCAATCTCAATGGTGGCCTGGGCACCGCTGGAGAGG--GTACGCTTGGCACGCTCGCAAG 164093 Query 7362 CCGTTCGTAAACGACGAAGGGCACGCGGGT---TACCGGAAATATCTTTCTTATGTTTAC 7418 | || || | | || || ||||| |||| | | || || ||||| || | Sbjct 164092 CAGTGCGGAGTCTTCGGAGAGCACGGGGGTCGTTGCTGGGG---TCCTTCTTGCTCTTGC 164036 Query 7419 GTTTAAACTCTTCAGAGAAGTG-TCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAG 7477 | | ||||| | | |||| || || || | | ||| || || | ||||||||| Sbjct 164035 GAGTGAACTCCTTCTTGCAGTGATCCAACAGGT-TGGTATCAAAGTCCTGGCCACCCAAG 163977 Query 7478 TGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAA 7537 || || || || ||||| || ||||| || | ||| || | ||||| | || || Sbjct 163976 TGGGTGTCACCAGCGGTAGCCTTGACGGTGAAAACACCACCCTGGATGTTGAGCAGGGAG 163917 Query 7538 ACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTC 7597 ||||| || ||||||||||| || || | || || ||||| || | ||| | || Sbjct 163916 ACATCGAAAGTACCACCACCAAGATCGTAGATCAGGACGTTGCGCTCCTTGTCAGTCTTG 163857 Query 7598 TTATCG---AGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654 | | |||||||| |||||||| || || || || || || || ||||| || | Sbjct 163856 CCAGCACCCAGACCGTAGGCGATAGCAGCAGCGGTGGGCTCGTTGATGATACGGAGGACG 163797 Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714 || ||||||||||| | | ||||| || || || || || || ||||| |||||| Sbjct 163796 TTGAGGCCAGCAATGGCACCAGCATCCTTGGTAGCCTGACGCTGGTTGTCGTTGAAGTAG 163737 Query 7715 GCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCT 7774 || ||||| || | ||| || | | || ||||| ||||| | | || || || || Sbjct 163736 GCAGGGACAGTGATGACAGCCTTCTCAACCTTCTTGCCGAGCTTGGTCTCAGCAATCTCC 163677 Query 7775 TTCAT 7779 ||||| Sbjct 163676 TTCAT 163672 >seq93 Length=305044 Score = 104 bits (114), Expect = 3e-17 Identities = 340/522 (65%), Gaps = 15/522 (3%) Strand=Plus/Plus Query 105559 TCAACGCGTTTCATGAACAAATCTGGAATCCACATGGCTGAAAAGAGGTCTCGACACCTC 105618 ||||| || |||||||| | ||| |||||||| | || || | ||| ||| | Sbjct 225097 TCAACACGCTTCATGAAGAGATCGGGAATCCAGAGAGCAAGGAATAAGTCGCGAGCACGG 225156 Query 105619 GCCTCTTCATCACCTTGATTCAAACGAATTTCGAGAAAATCGAGAATATCGGCGTGCCAT 105678 |||| || | ||| || ||| || | || || || || | | ||| ||||||||| Sbjct 225157 ACCTCCTCCTTACCGTGGTTCTTGCGGAGATCAAGGAACTCAAAGACATCAGCGTGCCAT 225216 Query 105679 GGTTCTAAATAGACTGCAATAGACCCTTTACGACGC------CCCGCTTGATTGACATAT 105732 || || | |||| |||| || | | | ||||| || | || | ||| ||| Sbjct 225217 GGCTCCAGGTAGATGGCAA-AGGCAC--CAGGACGCTTGTTGCCACCCTGGTCGACGTAT 225273 Query 105733 CTTGCGGTTGAGTTATACACTCGTAACATTGGAATAATACCATCGGATGTTCCATTTGTT 105792 || || || ||| | ||||| | ||| ||||| ||||| | ||| || || || || Sbjct 225274 CTGGCAGTGTTGTTGAAGACTCGAAGCATGGGAATGATACCGTTGGAAGTACCGTTGGTG 225333 Query 105793 CCACGAATATGTGATTTATTTGCACGTACATCGTGAACGTGTAACCCAATACCCCCAGCC 105852 || ||| | || | ||||| | ||| |||| || || || || |||||| Sbjct 225334 CCCGCAATGTAAGAACCGGTGGCACGGATGCGGTGGACGTTCAAGCCGATGCCGCCAGCC 225393 Query 105853 CACTTACTGATACGCGCACACTCTTTTACTGTATCGTAAATACCGTCGATACTATCTTCC 105912 ||| || |||||| || | || || || ||||| || || ||||| ||| Sbjct 225394 ATCTTGGAAATCATGGCACACGTCTTCAGAGTGTCATAGATACCCTCAATGCTATCGTCC 225453 Query 105913 TTATTCGCAATCAGGAAACACGATGACATTTGTGGTCTG-GGTGTACCAGCATTGAACAG 105971 || | ||| || ||| || || |||| || || ||| || |||||||| ||||| || Sbjct 225454 TTCATGTCAACCAAGAAGCATGAAGACAGCTG-GGCCTGCGGGGTACCAGCGTTGAAGAG 225512 Query 105972 AGTTGGTGTTGCATGAATGAACAAACCTT--TCGATAACGCTTCGTATGTTTCCAGGACG 106029 || || | || || |||| || ||| |||| | | |||||| |||||||| Sbjct 225513 GGTGGGGGAGGCGTGGGTGAAGAA--CTTGCTCGACATGAGGTGGTATGTCTCCAGGACA 225570 Query 106030 TGATCAATATCGTGTCCATGAATACCAATAGCGACGCGCATA 106071 | ||||| |||| ||| || |||| ||| || |||||| Sbjct 225571 CGCTCAATGTCGTCTCCCCAGATGCCAACAGCCACTCGCATA 225612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635131950509880