Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001835465.1_202016-10-24] 107 sequences; 45,820,083 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq93 282 5e-71 seq97 138 1e-27 seq95 93.3 5e-14 >seq93 Length=305044 Score = 282 bits (312), Expect = 5e-71 Identities = 935/1433 (65%), Gaps = 31/1433 (2%) Strand=Plus/Minus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 |||||| ||||| | ||||| || || | || ||| || || || ||||| ||| Sbjct 225626 CCACAGCACATGATTATGCGAGTGGCTGTTGGCATCTGGGGAGACGACATTGAGCGTGTC 225567 Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTC 111731 ||||||||||| || ||||| | | |||| |||||| | || ||||||||| Sbjct 225566 CTGGAGACATACCACCTCATGTCGAGCAAGTTCTTCACCCACGCCTCCCCCACCCTCTTC 225507 Query 111732 AACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGAT 111791 ||||||||||| || |||| |||| || ||| | ||| | ||||| ||| Sbjct 225506 AACGCTGGTACCCCGCAGGCCCAGCTGTCTTCATGCTTCTTGGTTGACATGAAGGACGAT 225447 Query 111792 TCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGT 111851 || | || || || | |||||| | |||||| || || ||| |||||| Sbjct 225446 AGCATTGAGGGTATCTATGACACTCTGAAGACGTGTGCCATGATTTCCAAGATGGCTGGC 225387 Query 111852 GGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAAT 111911 || ||||| || || |||| || | |||| | ||| ||| || || || Sbjct 225386 GGCATCGGCTTGAACGTCCACCGCATCCGTGCCACCGGTTCTTACATTGCGGGCACCAAC 225327 Query 111912 GGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTA 111971 ||| || | ||||| ||||| |||||||| || || ||| ||| || | || || Sbjct 225326 GGTACTTCCAACGGTATCATTCCCATGCTTCGAGTCTTCAACAACACTGCCAGATACGTC 225267 Query 111972 AACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCAC 112025 |||| | ||| ||||| || | | || |||| || |||||||||||| Sbjct 225266 GACCAGGGTGGCAACAAGCGTCCT---GGTGCCTTTGCCATCTACCTGGAGCCATGGCAC 225210 Query 112026 GCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGC 112085 || ||| || | ||||||||||| | || ||||| ||| | ||||||| || ||| Sbjct 225209 GCTGATGTCTTTGAGTTCCTTGATCTCCGCAAGAACCACGGTAAGGAGGAGGTCCG-TGC 225151 Query 112086 -CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGA- 112143 ||||| | ||| |||||||||||||| ||||||||||||||| | |||||| ||| Sbjct 225150 TCGCGACTTATTCCTTGCTCTCTGGATTCCCGATCTCTTCATGAAGCGTGTTGAGAAGAA 225091 Query 112144 -GTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGA-TGCCGTGGG 112201 ||| | ||| | ||| | || || || || || || || | || ||| | || Sbjct 225090 CTTGG--ACTGGACGCTCATGTGCCCCAACGAGTGCCCTGGCCTTGCTGACTGCTAT-GG 225034 Query 112202 TGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGC--GACG 112259 |||||||| || || | || ||||||||| | || | || | | | || ||| Sbjct 225033 CGAGGAGTTCGAGGCTTTGTATGAGAAGTACGAGAAGGAGGGACGTG-GTC-GCAAGACT 224976 Query 112260 GTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACC 112318 | | ||| | || | ||||| | | || || | | || ||||||||||| | || Sbjct 224975 ATCCGCGCT-CAGAAGCTGTGGTATTCCATCCTGGAAGCCCAGACCGAGACTGGCAACCC 224917 Query 112319 ATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGAT 112378 | ||||| ||||| ||| ||| |||| ||||| || || ||||| ||||| || Sbjct 224916 CTTCATGCTCTACAAGGACCACTGCAACCGCAAGAGCAACCAGAAGAACCTGGGTACCAT 224857 Query 112379 CAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGT 112438 | || || |||||||| || || || | || | | | |||||| ||||| Sbjct 224856 CCGCAGCTCTAACCTCTGCACTGAGATTATTGAGTACTGTGCCCCTGATGAGGTTGCTGT 224797 Query 112439 GTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGA-TCCAGAGACAAAGACATTTG 112497 || ||| | || || | || ||||| ||||| || | || || | | | || Sbjct 224796 CTGCAACTTGGCCTCTTTGGCCCTCCCTGCCTATGTCGACTACAACGA-AGGGTGCTATG 224738 Query 112498 ATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTG 112557 | | | | || || |||||||| || || || ||||| |||| |||||| Sbjct 224737 ACTTTAAGAAGCTTCACGAAGTCACCAAGGTGGTTGTCCGTAACCTGAACAAGATTATTG 224678 Query 112558 ATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTG 112617 || || ||||| || || || ||||| || ||| | ||| | || || | Sbjct 224677 ATGTGAACCACTACCCTGTCCAGGAGGCCCGTAACAGCAACATGCGTCACAGACCTATCG 224618 Query 112618 GTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATT-CTTTGTCGCCACGCATTTGATTCC 112676 || | |||||||| ||||| || |||| ||| || | || ||| | ||||| || Sbjct 224617 GTGTTGGTGTCCAGGGTCTTGCTGATGCTTTCCTTGCCCTG-CGCATGCCTTTTGAGTCT 224559 Query 112677 GACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGAG 112736 || || || | || || || ||||||||||| || ||||| || |||||| Sbjct 224558 CCTGAGGCTCGCGAGCTGAACAAGCAGATCTTTGAGACAATCTACCACGCTGCCCTTGAG 224499 Query 112737 GCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCT 112796 || | |||| | || |||| || || || || || | || |||| || || || Sbjct 224498 GCTTCTATGGAGATTGCCAAGGTCGAGGGCCCCTACCAATCATTCAAGGGATCACCTGCA 224439 Query 112797 TCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGAC--CAAGCTTCACTACGACT 112854 || | || | |||||||| || |||||||| | || | | ||| | || | Sbjct 224438 TCTGAGGGCATCCTTCAATTCGACATGTGGGATGTCAAGCCCTCCGACTT--GTGGGAGT 224381 Query 112855 GGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCAC 112914 ||||| |||||||||| | ||||||||| | ||| | || ||||| | | | || | Sbjct 224380 GGGACTCTCTCAAGGAGCAGATCAAGGAGCACGGTGTGCGCAACAGCTTGCTCGTTGCCC 224321 Query 112915 CAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACA 112974 | |||||||| ||| ||| | || ||| |||| || ||||| ||||| || ||||||| Sbjct 224320 CTATGCCAACTGCCAGCACTTCCCAGATCCTGGGCAACAATGAGTGCTTCGAGCCCTACA 224261 Query 112975 CGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAAC 113027 | | |||||||| | | | | ||| || || ||||| | |||||||| Sbjct 224260 CCTCCAACATCTACCAGCGCCGTGTCCTTGCCGGCGAGTTCCAGGTTGTCAAC 224208 >seq97 Length=261666 Score = 138 bits (152), Expect = 1e-27 Identities = 353/524 (67%), Gaps = 15/524 (3%) Strand=Plus/Plus Query 101817 TGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACGATTGGAAGACTC---TAAAT 101873 ||||| || |||||| | || || || |||||| || |||| ||||| | | | || Sbjct 3241 TGGACCGCCGAAGAGATTGACCTGTCCAAGGATCTGCACGACTGGAACAACCGCCTGAAC 3300 Query 101874 GAAAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGGTCCGATGGAATT 101933 || | || ||| | ||||| |||||||||| |||||||| | || ||||| ||| Sbjct 3301 GATGACGAGAAGTACTTCATCTCTCACATCCTGGCCTTCTTTGCCGCCTCTGATGGCATT 3360 Query 101934 GTTTTTGAGAATATCAATAACAACTTTGCTGATGAGGTGCA-ATCCTCTGAAGCGAGATC 101992 || ||||| | | ||| | ||||| || |||| | || || ||| Sbjct 3361 GTCAACGAGAACCTGGTCGAGCGCTTCAGCGGCGAGGTCCAGATCCCC-GAGGCTCGATG 3419 Query 101993 TTTCTATGCGTATCAATGTCATAATGAA-ATGGTGCATGGGGAGACATACAGTAAACTCA 102051 ||||| | | || | |||| ||| | | | || ||||| ||| |||| Sbjct 3420 CTTCTACGGCT-TCCAGATCATGATGGAGAACATCCACTCCGAGACCTACTCCCTGCTCA 3478 Query 102052 TAGACAAGTATATTAAGGATGGTGCTG--AGAAGAAGCAGCTCTTTGAAGCCATCCAAAC 102109 | |||| || || ||||| | | | || || | ||||| | ||||| | || Sbjct 3479 TCGACACCTACATCAAGGA--GAACAGCCAGCGCAACTATCTCTTCAACGCCATTGAGAC 3536 Query 102110 AGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGTCGC 102168 | || || |||| ||||| || || ||||| || |||||| | | |||| | | Sbjct 3537 TATCCCTTGCATTCGCAAGAAGGCTGACTGGGCCATCAAGTGGATCCAGGACAAGAACTC 3596 Query 102169 GTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTT 102228 |||||||||| |||| || | || ||||| || ||||||||||||||| || Sbjct 3597 -TTCCTTTGCTCAGCGCCTGGTTGCCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGCG 3655 Query 102229 CCTTCTGC-GCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCC 102287 |||| ||| | || | |||||||||||||||||||||||||| || || ||| ||| Sbjct 3656 CCTT-TGCATCCATCTTCTGGCTCAAGAAGCGAGGTCTCATGCCCGGCCTGACCTTTTCC 3714 Query 102288 AACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 |||||||| ||||||||||||||||| || ||| || ||||| Sbjct 3715 AACGAGCTCATCTCTCGTGACGAGGGTCTGCACACCGACTTTGC 3758 >seq95 Length=514606 Score = 93.3 bits (102), Expect = 5e-14 Identities = 182/262 (69%), Gaps = 9/262 (3%) Strand=Plus/Plus Query 16064 GGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAG 16123 ||| || || || |||||||||| ||||| ||| || | ||| | | | || | Sbjct 45838 GGCGTCGATTTCGTCAATGAAGATAATGCAAGGTGCGTTCTTTCGACCTTCGGCGAACAA 45897 Query 16124 ATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA-AC 16182 || || ||||| | || |||||||||||||||||||| || | | || || Sbjct 45898 GTCTCGCACACGAGAAGGACCAACACCAACAAACATCTCCACGAACTCAGATCCGCTCAC 45957 Query 16183 ATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 16242 || | ||| || ||| || || || ||| | || ||||||||||||||| || | Sbjct 45958 GCTGAA-GAAAGGCACACCGGACTCTCCAGCAGTAGCCTTGGCGAGAAGAGTCTTTCCTG 46016 Query 16243 TACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC--ACTTC-CAAAGT 16299 | ||||| || ||||| | ||||||||| |||||||| ||||| |||| |||| | Sbjct 46017 TTCCTGGTGGGCCGGCGAGAATGGCACCTCGAGGAATCTTTGCGCCCAGCTTCTCAAACT 46076 Query 16300 ATCTCTCAGGTTGCTT-AAGAA 16320 ||||||| ||||| ||||| Sbjct 46077 ---TCTCAGGCTGCTTCAAGAA 46095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620741569757040