Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001835465.1_202016-10-24] 107 sequences; 45,820,083 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq93 235 6e-57 seq55 84.2 3e-11 >seq93 Length=305044 Score = 235 bits (260), Expect = 6e-57 Identities = 1099/1724 (64%), Gaps = 57/1724 (3%) Strand=Plus/Plus Query 109378 AATTGGATTGGTCGAGCTTTCGCCTTCGAGCGAAGATAATACATACCCGTTTTGAGACCA 109437 || ||||| ||| |||| |||| | |||||||| ||||| || || ||||||||| Sbjct 223873 AACTGGATGGGTGCAGCTGCGGCCTGGGTACGAAGATAGTACATGCCGGTCTTGAGACCA 223932 Query 109438 GCCTTCCATGCGTACATATGCATTGAAGAGAGTTTGGAAAGTGTCGGACTCTCCATAAAC 109497 |||||| | | ||||| | | ||| | ||| || || ||| Sbjct 223933 AGCTTCCAGCCAGTGAAGTGCATGCTGGTAATCTTGCCCATTGTGGGGTCCTTCATGTGG 223992 Query 109498 AAGTTCATCGACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGATA 109557 | ||||| ||||| ||||| || ||||| |||||| || |||||||| | || Sbjct 223993 ATGTTCAGGGACTGGGACTGGTCAATGAAAGCACCACGGTCGGCCGCCATCTGGA----- 224047 Query 109558 CACTTTTG-GCT----AATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAA 109612 || ||| | ||| ||| |||||||| ||||||||||| ||||||||| ||||| | Sbjct 224048 CAATTTGGCGCTGAGAAATCTCCCAGACGGTCTTGTACAATGCCTTGATATCCTCGGGGA 224107 Query 109613 TGTCCACGATGTTTTGAATAGAGCC---ACCAGCCTTCACCATGAGATCCTTCATCTCTT 109669 ||| |||||| ||||| ||||| |||| | || | | |||||| | | Sbjct 224108 TGTTGGGGATGTTCTGAATGGAGCCGTTCTCAGC---AATAATACGGTTCTTCATGGCAT 224164 Query 109670 TCGACCAGAGACCGACCTTTTTGAGATCGTCAACAAGATGCTTGTTGACCACGACAAATT 109729 |||||||| || | || || | | ||| |||||| || || | Sbjct 224165 CGGACCAGAGGCCAGTGTCGACCAGGTCCTTGAGAAGCCAAGGGTTGACAACCTGGAACT 224224 Query 109730 CACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGT 109789 | || ||||| || || |||||||||| | |||||||| ||||| |||||||||| Sbjct 224225 CGCCGGCAAGGACACGGCGCTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCATTGT 224284 Query 109790 TGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGA 109849 |||| ||||| || | |||| || || ||||| || || | ||| | ||||| || | Sbjct 224285 TGCCCAGGATCTGGGAAGTGCTGGCAGTTGGCATAGGGGCAACGAGCAAGCTGTTGCGCA 224344 Query 109850 GACCCTTCGTCTTTACCCGCTCACGCATTGCGTCCCAATCATAACGACCACTAAATTTA- 109908 ||| | | ||| | | |||| | | |||||| || |||| | | Sbjct 224345 CACCGTGCTCCTTGATCTGCTCCTTGAGAGAGTCCCACTC-------CCACAAGTCGGAG 224397 Query 109909 GTCTCACCATCCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAA 109968 | || |||||||||| || |||||| | ||||||| ||||| || |||||||| Sbjct 224398 GGCTTGACATCCCACATGTCGAATTGAAGGATGCCCTCAGATGCAGGTGATCCCTTGAAT 224457 Query 109969 CTCTCGTACGACCCCTCAACCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATAC 110028 | ||| | ||||| |||| ||| | ||| |||||||| || || || || || Sbjct 224458 GATTGGTAGGGGCCCTCGACCTTGGCAATCTCCATAGAAGCCTCAAGGGCAGCGTGGTAG 224517 Query 110029 ATAGTCTCAAAAATATGAGCATTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGACCA 110088 || |||||||| || || |||| ||||| ||| | | || || || | | Sbjct 224518 ATTGTCTCAAAGATCTGCTTGTTCAGCTCGCGAGCCTCAGGAGACTCAAAAGGCA-TGCG 224576 Query 110089 CAAAG-AATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCAT 110147 || | || || |||| || |||||||| ||||| | ||| || || | || ||| Sbjct 224577 CAGGGCAAGGAAAGCATCAGCAAGACCCTGGACACCAACACCGATAGGTCTGTGACGCAT 224636 Query 110148 GTTAGAGCGTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATT 110207 ||| | || || | || ||||| ||| || || | | || || || Sbjct 224637 GTTGCTGTTACGGGCCTCCTGGACAGGGTAGTGGTTCACATCAATAATCTTGTTCAGGTT 224696 Query 110208 CTTCGTCACAGTCTTCGTGATTTCATGGAGTTTGT---CGTAATCGAACGTTTTCGTCTC 110264 || ||| |||| ||| || || || | || || | || |||| | Sbjct 224697 ACGGACAACCACCTTGGTGACTTCGTGAAGCTTCTTAAAGTCATAGCAC-CCTTCG--TT 224753 Query 110265 CTTATTGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTT 110324 | | |||||| ||||| || | ||| || | ||||| |||| | ||| || Sbjct 224754 GTAGTCGACATAGGCAGGGAGGGCCAAAGAGGCCAAGTTGCAGACAGCAACCTCATCAGG 224813 Query 110325 GTCGGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTT 110384 | | ||| || | ||| || || || | ||| || || ||| ||||| |||||| Sbjct 224814 GGCACAGTACTCAATAATCTCAGTGCAGAGGTTAGAGCTGCGGATGGTACCCAGGTTCTT 224873 Query 110385 CTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGT 110444 ||| || ||| |||||| ||||| ||||||||| | ||| | ||||| || || Sbjct 224874 CTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTAGAGCATGAAGGGGTTGCCAGTCTCGGT 224933 Query 110445 CTGTGACTTGAGAATGGCCTTCCATA-CATCGGCGGCGGGGACAG--TTGCGTTAGCGAG 110501 ||| | | || |||| | ||| | | || | ||| ||| || ||||| | | | Sbjct 224934 CTGGGCTTCCAGGATGGAATACCACAGCTTCTG-AGCGCGGATAGTCTTGCG--ACCACG 224990 Query 110502 ACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAG 110561 || |||| ||||||||| ||||| |||| || |||| || || |||| ||| Sbjct 224991 TCCCTCCTTCTCGTACTTCTCATACAAAGCCTCGAACTCCTCGCCATAGCAGTCAGCAAG 225050 Query 110562 ACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCA--CCCTCCTCAACCCTCTTC 110619 || || || ||| || | ||| | ||| |||| || |||||| | |||| Sbjct 225051 GCCAGGGCACTCGTTGGGGCACATGAGCGTCCA--GTCCAAGTTCTTCTCAACACGCTTC 225108 Query 110620 ATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCA 110679 ||||| || || |||||||| | || ||| | ||| || ||| |||| || | | Sbjct 225109 ATGAAGAGATCGGGAATCCAGAGAGCAAGGAATAAGTCGCGAGCACGGACCTCCTCCTTA 225168 Query 110680 CCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAG 110739 || ||||| ||| || || | || || | || ||| | ||||||||| || || ||| Sbjct 225169 CCGTGGTTCTTGCGGAGATCAAGGAACTCAAAGACATCAGCGTGCCATGGCTCCAGGTAG 225228 Query 110740 ACAGCGATGGATCCCTTACGACG------ACCCGCCTGGTTAACATAGCGTGCTGTGGCA 110793 | || | || || | |||| || |||||| || || | || ||| Sbjct 225229 ATGGCAAAGGCACC---AGGACGCTTGTTGCCACCCTGGTCGACGTATCTGGCAGTGTTG 225285 Query 110794 TTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTG 110853 |||||||| | ||||| ||||| || || | ||| ||| || || ||| ||| Sbjct 225286 TTGAAGACTCGAAGCATGGGAATGATACCGTTGGAAGTACCGTTGGTGCCCGCAATGTAA 225345 Query 110854 GACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATT 110913 || ||||||| ||| ||||| | || || || || || ||| ||| ||| Sbjct 225346 GAACCGGTGGCACGGATGCGGTGGACGTTCAAGCCGATGCCGCCAGCCATCTTGGAAATC 225405 Query 110914 TGTGCACAC-TCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAAT 110972 |||||| ||| | || || |||| ||||| ||||| ||| |||| || ||| Sbjct 225406 ATGGCACACGTCT-TCAGAGTGTCATAGATACCCTCAATGCTATCGTCCTTCATGTCAAC 225464 Query 110973 TAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGC 111032 | ||||| ||||||| ||| | | || || || || |||||||| || || | || Sbjct 225465 CAAGAAGCATGAAGACAGCTGGGCCTGCGGGGTACCAGCGTTGAAGAGGGTGGGGGAGGC 225524 Query 111033 ATGAATGAACAGACCTTG--GGACATCTTGTTGTATGTGTCGAG 111074 || ||| ||| |||| ||||| || |||||| || || Sbjct 225525 GTGGGTGA--AGAACTTGCTCGACATGAGGTGGTATGTCTCCAG 225566 >seq55 Length=794399 Score = 84.2 bits (92), Expect = 3e-11 Identities = 171/254 (67%), Gaps = 0/254 (0%) Strand=Plus/Plus Query 11737 AAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCA 11796 || || || || || ||||| ||||| ||||| || || || ||| |||| | | || Sbjct 739235 AATAGCTCTCGAACGCGCTTGGCTCCGACACCAACAAAGATTTCATCGAATTCACTGCCA 739294 Query 11797 GAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTA 11856 || | | |||||| || | ||| ||||||| ||||||||||| || ||||| Sbjct 739295 GACATGTAGAAGAAGGGGACGCCGGCCTCTCCAGCGACAGCTCGAGCGAGCAGCGTCTTT 739354 Query 11857 CCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTCCAAAG 11916 || |||||||| | ||| |||| || | || ||| | ||| ||||| || || Sbjct 739355 CCAGTACCAGGGGGTCCAACGAGGAGAACACCTTTGGGCAGCTTAGCACCCAGGTCAGAG 739414 Query 11917 TAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGCGGAGTCG 11976 ||| || || || ||| || || || | ||||| || || |||||||| |||| Sbjct 739415 AAGCTATCCGGGTTGCGGAGAAATTCGACCACCTCCTGCAGCTCTTCCTTGGCCTCGTCG 739474 Query 11977 ATACCCTCAACATC 11990 || | |||||| Sbjct 739475 CATCCATGAACATC 739488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588975212244600