Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001835465.1_202016-10-24] 107 sequences; 45,820,083 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq93 257 2e-63 seq97 118 1e-21 >seq93 Length=305044 Score = 257 bits (284), Expect = 2e-63 Identities = 943/1449 (65%), Gaps = 61/1449 (4%) Strand=Plus/Plus Query 105895 GTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAGGG 105954 |||||||| | ||||| || || ||| | | | | |||||||| | |||||||| Sbjct 224208 GTTGACAACCTGGAACTCGCCGGCAAGGACACGGCGCTGGTAGATGTTGGAGGTGTAGGG 224267 Query 105955 TTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCAT 106014 || ||||| ||||| || |||| ||| || | ||| ||| |||||||| || || | Sbjct 224268 CTCGAAGCACTCATTGTTGCCCAGGATCTGGGAAGTGCTGGCAGTTGGCATAGGGGCAAC 224327 Query 106015 CAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTA 106074 | | ||||| || | ||| | |||||||| | ||||||||| ||||| || | Sbjct 224328 GAGCAAGCTGTTGCGCACACCGTGCTCCTTGATCTGCTCCTTGAGAGAGTCCCACTCCCA 224387 Query 106075 ---GTTG-AGCTTGGTTTCACCTTCCCACATATCAAATTGAAGCACCCCTTGGGACGTGG 106130 || | || || || || | ||||||| || |||||||| | || | || | | Sbjct 224388 CAAGTCGGAG---GGCTTGACAT-CCCACATGTCGAATTGAAGGATGCCCTCAGATGCAG 224443 Query 106131 GAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTC-ACAGCTCGCCTCC 106189 | || |||| |||| | |||| || | | | | || | || | || ||||| Sbjct 224444 GTGATCCCTTGAATGATTGGTAGGGGCCCTCGACCTTGGCAATCTCCATAGAA-GCCTCA 224502 Query 106190 AGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAA 106249 |||| ||||| || || || |||||||| | |||| ||| || ||| || Sbjct 224503 AGGGCAGCGTGGTAGATTGTCTCAAAGATCTGCTTGTTCAGCTCGCGAGCCTCAGGAGAC 224562 Query 106250 TCAAA-----TGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAAC 106304 ||||| |||| || |||| | || |||| || ||||| || ||||| | || Sbjct 224563 TCAAAAGGCATGCGCAG-GGCA----AGGAAAGCATCAGCAAGACCCTGGACACCAACAC 224617 Query 106305 CAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGT 106364 | ||||||||||| ||||| || || || || || || || || || | Sbjct 224618 CGATAGGTCTGTGACGCATGTTGCTGTTACGGGCCTCCTGGACAGGGTAGTGGTTCACAT 224677 Query 106365 CAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAAT 106424 |||| | ||| || || | ||| | ||| |||| ||| ||||| || | | | | Sbjct 224678 CAATAATCTTGTTCAGGTTACGGACAACCACCTTGGTGACTTCGTGAAGCTTCTTAAAGT 224737 Query 106425 CAAAAGTGCGAGTCTCTTCATTG------ACATACTTTGGAAGGGCGATTGATGCCAAAT 106478 || | || | |||| ||| ||||| || ||||| | || ||||| | Sbjct 224738 CATA---GCA---CCCTTCGTTGTAGTCGACATAGGCAGGGAGGGCCAAAGAGGCCAAGT 224791 Query 106479 TGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAAC 106538 |||| ||||| |||||| | |||||| | ||| || || || | ||| || | Sbjct 224792 TGCAGACAGCAACCTCATCAGGGGCACAGTACTCAATAATCTCAGTGCAGAGGTTAGAGC 224851 Query 106539 TCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCA 106598 | || || |||| ||||| ||||| ||||| |||||| ||||||||||||| Sbjct 224852 TGCGGATGGTACCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTAGAGCA 224911 Query 106599 TGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA-CATCGGCG-GC 106656 || |||| | || ||||| ||||| | | || || | | ||||| | || | | || Sbjct 224912 TGAAGGGGTTGCCAGTCTCGGTCTGGGCTTCCAGGATGGAATACCACAGCTTCTGAGCGC 224971 Query 106657 TGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTC 106716 | || | ||| | ||||||||| ||||||||| || | || || ||||| Sbjct 224972 GGATAGTCTTGCG--ACCACGTCCCTCCTTCTCGTACTTCTCATACAAAGCCTCGAACTC 225029 Query 106717 CTCACCCACCGC-GTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGAC 106775 ||| ||| || ||| | || || || || || || || | || | ||| | | Sbjct 225030 CTC-GCCATAGCAGTCAGCAAGGCCAGGGCACTCGTTGGGGCACATGAGCGTCCA--GTC 225086 Query 106776 CA--CCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAG-GGATGAAAAGAGAT 106832 || || |||||| ||||||||||| || || |||||||| || | | | || || | Sbjct 225087 CAAGTTCTTCTCAACACGCTTCATGAAGAGATCGGGAATCCAGAGAGCAAGGAATAAG-T 225145 Query 106833 CTCTA-CACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATA 106891 | | | ||| || |||| || | ||| ||||| || | ||||||||||| | || | Sbjct 225146 CGCGAGCACGGA-CCTCCTCCTTACCGTGGTTCTTGCGGAGATCAAGGAACTCAAAGACA 225204 Query 106892 TCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC------CCAGCT 106945 || |||||||||||||| || |||| || | | || ||||| ||| | Sbjct 225205 TCAGCGTGCCATGGCTCCAGGTAGATGGCAAAGGCACC---AGGACGCTTGTTGCCACCC 225261 Query 106946 TGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGAT 107005 || | || || | || ||| ||| || || |||||||| ||||| ||||| | || Sbjct 225262 TGGTCGACGTATCTGGCAGTGTTGTTGAAGACTCGAAGCATGGGAATGATACCGTTGGAA 225321 Query 107006 TGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCA 107065 ||| || || ||| ||| ||| |||| | | |||| || || || Sbjct 225322 GTACCGTTGGTGCCCGCAATGTAAGAACCGGTGGCACGGATGCGGTGGACGTTCAAGCCG 225381 Query 107066 ATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTG 107125 || || |||||| ||| || || |||||| | | ||||| |||||||||| | Sbjct 225382 ATGCCGCCAGCCATCTTGGAAATCATGGCACACGTCTTCAGAGTGTCATAGATACCCTCA 225441 Query 107126 ATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCT-TGGTGTACC 107184 || || ||||| || | | | |||||| |||| ||| || || || ||||| Sbjct 225442 ATGCTATCGTCCTTCATGTCAACCAAGAAGCATGAAGACAGCTG-GGCCTGCGGGGTACC 225500 Query 107185 AGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG--GGACATCTTGTCGTAT 107242 ||| ||||||||||| || | ||||| ||| | | |||| ||||| || |||| Sbjct 225501 AGCGTTGAAGAGGGTGGGGGAGGCGTGGGTGA--AGAACTTGCTCGACATGAGGTGGTAT 225558 Query 107243 GTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATG 107302 ||||||| |||| |||||||| || || |||||| | ||||| ||||||| |||| Sbjct 225559 GTCTCCAGGACACGCTCAATGTCGTCTCCCCAGATGCCAACAGCCACTCGCATAATCATG 225618 Query 107303 TATTGGGGT 107311 | || ||| Sbjct 225619 TGCTGTGGT 225627 >seq97 Length=261666 Score = 118 bits (130), Expect = 1e-21 Identities = 532/825 (64%), Gaps = 41/825 (5%) Strand=Plus/Minus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 ||||| |||| ||||||||||||||||||||||| ||| |||| |||||| |||||| Sbjct 4046 TAGTCGGCAACACGCTTCTCAAAGAAGTTGGTCTTGCCACCAAGAGAAATGTTCTCCATA 3987 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAATGG----GTGGC--ACCCCAACTTGTTTGAGG 117099 |||||||| || || | || | || || || | |||| || Sbjct 3986 AAGTCAAAGGGGTTGGAAGACTTGTAGATCTTCTCGTTGCCGAGAGCAACA------AGC 3933 Query 117100 AGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGA 117159 || || || | ||| |||| ||||||| |||| | |||||||| || | || Sbjct 3932 AGGCGGTCAGCAACAAACTCGATGTACTGCTTCATCAAGTTGGAGTTCATGCCCAGCAGG 3873 Query 117160 TTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATG 117219 || ||||| || || | |||| ||| |||||| || || || | | |||| Sbjct 3872 GCGCAGGGGAGAGCCTCGGTCAAGAACTCTTGCTCAATTCGGACAGCATCGGTGATGATG 3813 Query 117220 GCGTGGATAGTTTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACG---GCA 117276 | |||| || | ||| | || | | || | || || || | ||| Sbjct 3812 TCACGGATCACCTCCTTGCTGGCGCGGTT-CTTGAGGTG--GGAGTGCAACAGGCAGGCA 3756 Query 117277 AACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGC 117336 || || ||| |||||||| || || || || || || || || ||| ||||| ||| Sbjct 3755 AAGTCGGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGGCCGGGC 3696 Query 117337 ATGAGACCCCGCTTCTTCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGATACC 117395 |||||||| |||||||| | ||| | || | ||| || | ||| |||||||||||| Sbjct 3695 ATGAGACCTCGCTTCTTGAGCCAGAAGATGGATGCA-AAGGCGCCGCTGAAGAAGATACC 3637 Query 117396 CTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTC---AAA 117452 ||| || ||||| |||| ||||||| || ||||| ||| || |||| | Sbjct 3636 CTCGACGGCAGCAAAGGCAACCAGGCGCTGAGCAAAGGA---AGAGTTCTTGTCCTGGAT 3580 Query 117453 CCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC-TTCAA 117511 ||| || || ||||| | |||||||| ||| || || | ||| | ||||| || || Sbjct 3579 CCACTTGATGGCCCAGTCAGCCTTCTTGCGAATGCAAGGGATAGTCTCAATGGCGTTGAA 3520 Query 117512 ---ATAACTGCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATG 117568 ||| ||| | | | || ||||| ||||| |||| || | || || | Sbjct 3519 GAGATAGTTGC--GCTGGCTGTTC--TCCTTGATGTAGGTGTCGATGAGCAGGGAGTAGG 3464 Query 117569 TTTCGCCATGAACCAT-TTCATTATGGCATTGATATGCGTAGAATGAGCGCGCTTCGCTT 117627 | ||| || | | | ||| ||| | || | ||||||| | || || ||| Sbjct 3463 TCTCGGAGTGGATGTTCTCCATCATGATCTGGA-AGCCGTAGAAGCATCGAGCCTCGGGG 3405 Query 117628 ATCTGCACTTCATCCGCAAAATTG-TTATTGATATTCTCAAAAACAATTCCATCGGACCC 117686 ||||| || || |||| || | | | ||||| ||||| ||||| || | Sbjct 3404 ATCTGGACCTC-GCCGCTGAAGCGCTCGACCAGGTTCTCGTTGACAATGCCATCAGAGGC 3346 Query 117687 AGCAAAGAATGCCAGGATGTACTTTATGAATTTCTTTTCATTTTCATTCA---GGGTCTT 117743 |||||||| |||||||||| ||||| | ||| || | || |||| || | || Sbjct 3345 GGCAAAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTT 3286 Query 117744 CCAGTCGTCAAGATCTTTGGACAAATCAACTTCTTCCGCAGTCCA 117788 |||||||| ||||| ||||||| |||| ||||| || ||||| Sbjct 3285 CCAGTCGTGCAGATCCTTGGACAGGTCAATCTCTTCGGCGGTCCA 3241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589980010900680