Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001835465.1_202016-10-24] 107 sequences; 45,820,083 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq1 152 1e-31 seq47 111 3e-19 >seq1 Length=17084797 Score = 152 bits (168), Expect = 1e-31 Identities = 153/199 (77%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| ||||| ||||| || ||||| ||||| |||| || |||| ||||| || Sbjct 3412350 ACAAGGTGGAGAGTAGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCA 3412409 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||||||||| |||||||| ||||| || ||||| ||||||||||| || ||||| || Sbjct 3412410 AGCTGCTTACCAGCGAAGATGAGTCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGG 3412469 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| || || || ||||| || ||| ||||| || ||||| | |||||| Sbjct 3412470 ATCTTGGACTTCACATTGTCGATGGTATCAGAAGACTCCACCTCGAGGGTGATGGTCTTT 3412529 Query 195112 CCTGTCAAAGTTTTTACGA 195130 || || | || || |||| Sbjct 3412530 CCGGTGAGGGTCTTGACGA 3412548 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || ||||| || || || ||||| ||| || || | ||||| || Sbjct 1761266 ACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCC 1761207 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||||||||| |||||||| | ||| || ||||| || |||||||| || ||||| || Sbjct 1761206 AGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGG 1761147 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||| || || |||||||| ||| ||||| |||||||| | |||||| Sbjct 1761146 ATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTC 1761087 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | ||||| Sbjct 1761086 CCCGTGAGGGTCTTGACGAAAATCTGCAT 1761058 Score = 129 bits (142), Expect = 1e-24 Identities = 153/205 (75%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCT 194995 ||| || ||| ||| || || || ||||| ||| |||| || | || ||||| |||| Sbjct 3411899 GTGCAGTGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAAG-GTGCGACCGTCTTCCAGCT 3411957 Query 194996 GCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTT 195055 ||||||| |||||||| | || || ||||| ||||||||||| || |||||||| || | Sbjct 3411958 GCTTACCAGCGAAGATCAAGCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCTTGGATCT 3412017 Query 195056 TTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTG 195115 | ||||||||| || ||||| || ||| ||||| || ||||| | ||||| || | Sbjct 3412018 TGGACTTGACGTTGTCGATGGTATCAGAAGACTCCACCTCGAGGGTGATAGTCTTGCCGG 3412077 Query 195116 TCAAAGTTTTTACGAACACTTGCAT 195140 ||| || || || || | |||||| Sbjct 3412078 TCAGGGTCTTGACAAAGATTTGCAT 3412102 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||||||||| ||| ||| || ||||| ||||| ||| | ||| | || || || Sbjct 3412122 ACAAGGTGAAGTGTGCTCTCCTTCTGAATGTTGTAGTCGCTCAAAGTGCGGCCGTCCTCA 3412181 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || |||||||| || || || || || || || || || || || ||| Sbjct 3412182 AGCTGCTTGCCAGCAAAGATAAGACGCTGCTGATCCGGGGGGATACCCTCCTTATCCTGA 3412241 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || ||| |||||| || || ||||| || ||| ||||| || ||||| | ||||| Sbjct 3412242 ATCTTTGACTTGACATTGTCGATGGTATCAGAAGACTCCACCTCGAGGGTGATAGTCTTG 3412301 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| || || ||||| | ||||| Sbjct 3412302 CCAGTCAGGGTCTTGACGAAAATCTGCAT 3412330 >seq47 Length=144723 Score = 111 bits (122), Expect = 3e-19 Identities = 132/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012 || || || ||||| |||| || |||| ||||| ||||||||||| || || ||||| Sbjct 138396 TTCTGGATGTTGTAGTCGGACAGGGTTCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATC 138455 Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072 | ||| || ||||| || |||||||| || ||||| || || || |||||| || || Sbjct 138456 AATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 138515 Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131 || ||||| || || || |||||||| | ||||| || |||| || || ||||| Sbjct 138516 ATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 138574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109480078970069