Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001835465.1_202016-10-24] 107 sequences; 45,820,083 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq1 95.1 8e-15 seq47 89.7 3e-13 >seq1 Length=17084797 Score = 95.1 bits (104), Expect = 8e-15 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTC-CGAAAGGCTTCGTTCATCATC 34831 |||||||| | |||||| || ||||| ||||| ||||| | |||| | || | || || Sbjct 3411894 ACCAAGTGCAGTGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAAGG-TGCGACCGTCTTC 3411952 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 |||||| || || || || || | || |||||||| | || | ||||||||||| Sbjct 3411953 CAGCTGCTTACCAGCGAAGATCAAGCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCTTG 3412012 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 ||||| |||||| | || | ||| | ||| || |||| ||| || || || Sbjct 3412013 GATCTTGGACTTGACGTTGTCGATGGTATCAGAAGACTCCACCTCGAGGGTGATAGTCTT 3412072 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || || ||||| |||||||| |||||| Sbjct 3412073 GCCGGTCAGGGTCTTGACAAAGATTTGCATA 3412103 Score = 89.7 bits (98), Expect = 3e-13 Identities = 131/183 (72%), Gaps = 8/183 (4%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||| ||||| || ||| |||| |||| || ||||| || || || || Sbjct 3412368 TCCTTCTGAATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCAAGCTGCTTACCAGCGAAG 3412427 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || ||||| |||||||| | || | ||||||||||| ||||| || || || Sbjct 3412428 ATGAGTCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTTCAC--AT 3412485 Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | ||||| ||| | ||| || |||| ||| ||||| ||||| ||||| ||||| Sbjct 3412486 --TGTCGATGGTATCAGAAGACTCCACCTCGAGGGTGATGGTCTTTCCGGTGAGGGTCTT 3412543 Query 34967 CAC 34969 || Sbjct 3412544 GAC 3412546 Score = 82.4 bits (90), Expect = 5e-11 Identities = 147/210 (70%), Gaps = 10/210 (5%) Strand=Plus/Plus Query 34778 GTGAATTGTGCTTTCTTTCTGAATGTTATAGTC-CGAAAGGCTTCGTTCATCATCCAGCT 34836 ||||| |||||| || ||||||||||| ||||| | || | | || | || || |||| Sbjct 3412127 GTGAAGTGTGCTCTCCTTCTGAATGTTGTAGTCGCTCAAAG-TGCGGCCGTCCTCAAGCT 3412185 Query 34837 GTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCT 34896 | || || ||||| || || || ||||| || | || | |||||||| || ||||| Sbjct 3412186 GCTTGCCAGCAAAGATAAGACGCTGCTGATCCGGGGGGATACCCTCCTTATCCTGAATCT 3412245 Query 34897 TCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 | ||||| || | ||||| ||| | ||| || |||| ||| || || || Sbjct 3412246 TTGACTTGAC--AT--TGTCGATGGTATCAGAAGACTCCACCTCGAGGGTGATAGTCTTG 3412301 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || || ||||| || || ||||||||| Sbjct 3412302 CCAGTCAGGGTCTTGACGAAAATCTGCATA 3412331 >seq47 Length=144723 Score = 89.7 bits (98), Expect = 3e-13 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 34794 TTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATT 34853 ||||| ||||| ||||| || ||| |||| |||| || ||||| || || ||||| || Sbjct 138396 TTCTGGATGTTGTAGTCGGACAGGGTTCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATC 138455 Query 34854 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT 34913 | ||| |||||||| | || | ||||||||||| ||||| ||||| | Sbjct 138456 AATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 138515 Query 34914 ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAA 34972 |||| || || ||| || || | ||| ||||| || ||||| || |||||||| || Sbjct 138516 ATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 138574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324633176657496