Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001835465.1_202016-10-24] 107 sequences; 45,820,083 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq58 82.4 6e-11 >seq58 Length=533810 Score = 82.4 bits (90), Expect = 6e-11 Identities = 167/247 (68%), Gaps = 16/247 (6%) Strand=Plus/Minus Query 30046 GGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCC------TGATGAGG 30099 |||||||| |||| | ||| || | || ||| | |||||||| | || || | Sbjct 276643 GGGTTCCAAGCGCTGAGGATCATTCTCCGGTCGTAAGGGTTGTTGCGAAGCTTGTGGATG 276584 Query 30100 TCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCT--CATGTCCG 30157 | ||||| ||||| || || ||| | || | |||||||| | | ||| | || Sbjct 276583 ATCTCGGCG------AGCTGGTCGACACCCTTGCCGGCGTAGTCTGTCTTTGCATCTACG 276530 Query 30158 TGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTT 30217 | |||| || || || |||| ||||||||| ||||| || || |||||||| || | | Sbjct 276529 T--ACTCGGCGCCAAAGTGCCGCCACTGGAAGCCGTAGACGGGGCCCAGGTCGCCAACCT 276472 Query 30218 CCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCT 30277 | | ||| | ||| |||| | || || | ||| |||||| |||||||||||| Sbjct 276471 CGCGGTGGGTCAGGCCGACGCTGTCGAGGAACTCGCGGGACCCGTTGCCGTCCCAGATCT 276412 Query 30278 TTACCCC 30284 | || || Sbjct 276411 TGACGCC 276405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408617067137111