Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001835465.1_202016-10-24] 107 sequences; 45,820,083 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq93 379 4e-100 seq97 181 2e-40 >seq93 Length=305044 Score = 379 bits (420), Expect = 4e-100 Identities = 1154/1755 (66%), Gaps = 80/1755 (5%) Strand=Plus/Plus Query 212553 ACCGTAAACTGTACTGGATCAGCAGCAGCCTTGGTGCGTAGATAGTACATGCCGGTCTTT 212612 || || ||||| | || |||| || |||| ||| || |||||||||||||||||||| Sbjct 223867 ACGGTGAACTGGATGGGTGCAGCTGCGGCCTGGGTACGAAGATAGTACATGCCGGTCTTG 223926 Query 212613 AGGCC---CTTGCCCCAGCC-GTGCATGTGCATTGCTGTGAGTTTCTTCAGCTTAATATT 212668 || || ||| |||||| ||| | |||||| |||| | | ||| | ||| Sbjct 223927 AGACCAAGCTT---CCAGCCAGTGAA-GTGCAT-GCTGGTAAT--CTTGCCC-----ATT 223974 Query 212669 CTGGTCATCCTCGTGGCCCAGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGC 212728 ||| | || || || | |||||||||||| |||||| ||||| | | Sbjct 223975 GTGGGGTCCTTCATG-------TGGATGTTCAGGGACTGGGACTGGTCAATGAAAGCACC 224027 Query 212729 CCTGTCAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGAT 212788 | ||| || ||||| | | || | | ||| || | |||||| ||||||||| | | Sbjct 224028 ACGGTCGGCCGCCATCTGGACAATTTGGCGCTGAGAAATCTCCCAGACGGTCTTGTACAA 224087 Query 212789 TTCTTTGAGGTCCTCTGGGAAGCCGGGGATGTTCTGCACAGACCCCCTGTGT---ATGGT 212845 | | |||| ||||| |||| | |||||||||||| | || || | | || | Sbjct 224088 TGCCTTGATATCCTCGGGGATGTTGGGGATGTTCTGAATGGAGCCGTTCTCAGCAATAAT 224147 Query 212846 CAGCTGCAGGCGCATGTCCTCGTTCCAGAGGCCCCTGGTCTCCAGGCACTTGACCAGGTG 212905 | | | |||| | ||| ||||||||| || ||||| ||||| || Sbjct 224148 ACGGTTCTT---CATGGCATCGGACCAGAGGCCAGTGTCGACCAGGTCCTTGAGAAGCCA 224204 Query 212906 AGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTA 212965 ||||||||| | |||||| || || | || || | | |||||| | ||| || ||||| Sbjct 224205 AGGGTTGACAACCTGGAACTCGCCGGCAAGGACACGGCGCTGGTAGATGTTGGAGGTGTA 224264 Query 212966 GGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGC 213025 |||||||| || ||| ||||| ||||| ||||| | ||||||||| || ||||| || || Sbjct 224265 GGGCTCGAAGCACTCATTGTTGCCCAGGATCTGGGAAGTGCTGGCAGTTGGCATAGGGGC 224324 Query 213026 CACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCC--GA-AGCTCTGCCCA 213082 || || | ||||| | ||| |||||||| ||| | | || || || | Sbjct 224325 AACGAGCAAGCTGTTGCGCACACCGTGCTCCTTGATCTG-CTCCTTGAGAG--------A 224375 Query 213083 GTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCC 213142 |||||| || ||| || ||| | ||| || | ||||||||| || || | |||||| Sbjct 224376 GTCCCA-CTCCCA--CAAGTCGGAGGGCTTGACATCCCACATGTCGAATTGAAGGATGCC 224432 Query 213143 TTT-GCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGC 213201 | | | || | | |||| | | || ||||||||| | ||||||| | ||| Sbjct 224433 CTCAGATGCAGGTGAT-CCCTTGAATGATTGGTAGGGGCCCTCGACCTTGGCAATCTCCA 224491 Query 213202 AGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGG 213261 || |||| |||||||||| |||||| || ||||| |||| | |||| |||| | Sbjct 224492 TAGAAGCCTCAAGGGCAGCGTGGTAGATTGTCTCAAAGATCTGCTTGTTCAGCTCGCGAG 224551 Query 213262 CCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCC 213321 |||| || ||| || ||||| || | |||| ||||||| || |||||||| | Sbjct 224552 CCTCAGGAGACTCAAAAGGCATGCGCAGGGCAAGGAAAGCATCAGCAAGACCCTGGACAC 224611 Query 213322 CGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTGGAGCACTCCTCCAAGGGGTAAAAGT 213381 | | ||||| |||||||| | || ||| || | ||||| | ||||| || Sbjct 224612 CAACACCGATAGGTCTGTGACGCATGTTGCTGTTACGGGCCTCCTGGACAGGGTAGTGGT 224671 Query 213382 TGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACT 213441 | || || |||||||| ||||| ||| |||| |||||||| | | || | || Sbjct 224672 TCACATCAATAATCTTGTTCAGGTTACGGACAACCACCTTGGTGACTTCGTGAAGCTTCT 224731 Query 213442 CGTGATTGAACACGTAGCCCCCGTCCTGC------ACAAACTCAGGCAGGGCGATGCTGG 213495 | || | |||| ||| || | ||| | |||| ||||| | || Sbjct 224732 ------TAAAGTCATAGCACCCTTCGTTGTAGTCGACATAGGCAGGGAGGGCCAAAGAGG 224785 Query 213496 CCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGT 213555 ||| |||||| || || ||||| | || | | |||||| || ||||| ||||| |||| Sbjct 224786 CCAAGTTGCAGACAGCAACCTCATCAGGGGCACAGTACTCAATAATCTCAGTGCAGAGGT 224845 Query 213556 TGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAA-TCCTTG 213614 | || |||||||| |||||||||| ||||| ||| ||| | |||| |||||| Sbjct 224846 TAGAGCTGCGGATGGTACCCAGGTTCTTCTGGTTGCTCTT-GCGGTTGCAGTGGTCCTTG 224904 Query 213615 TAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTAC 213674 ||||||||| ||||| || ||||| ||||| |||| || ||| || | | Sbjct 224905 TAGAGCATGAAGGGGTTGCCAGTCTCGGTCTGGGCTTCCAGGATGGAATACCACAGCTTC 224964 Query 213675 CTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCCTCGTACTGTTCGTAGAGCTCG 213734 || || | | || ||| | | |||||||| || || | | Sbjct 224965 TGAGCGCGGATAGTCTTGCGACCACGTCCCTCCTT---CTCGTACTTCTCATACAAAGCC 225021 Query 213735 TTGAATTCGTGGCCCCAG-ACCCTGTCCAGTCCCGGACAGGATGCGGGACACATGAGGCT 213793 | ||| || | ||| || | | | | || || || || ||| |||||||| | Sbjct 225022 TCGAACTCCTCGCCATAGCAGTCAG-CAAGGCCAGGGCACTCGTTGGGGCACATGAGCGT 225080 Query 213794 CCAGTCCCCGT-CATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGA 213852 ||||||| || | |||| || | || |||||| || || || | ||| || || || Sbjct 225081 CCAGTCCAAGTTCTTCTCA-ACACGCTTCATGAAGAGATCGGGAATCCAGAGAGCAAGGA 225139 Query 213853 ACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAA 213912 | | ||| | | | ||| ||| || ||| ||||| ||||| || || |||| Sbjct 225140 ATAAGTCGCGAGCACGGACCTCCTCCTTACCGTGGTTCTTGCGGAGATCAAGGAACTCAA 225199 Query 213913 AGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCG---GCCTCTTGCCGC 213969 ||| || |||||||| ||||||| ||||||||||||||| || | || | ||||| | Sbjct 225200 AGACATCAGCGTGCCATGGCTCCAGGTAGATGGCAAAGGCACCAGGACGCTTGTTGCCAC 225259 Query 213970 CCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGG 214029 ||||||| || ||||| ||||||||| || || | ||| | | ||||||| Sbjct 225260 CCTGGTCGACGTATCTGGCAGTGTTGTTGAAGACTCGAAGCATGGGAATGATACCGTTGG 225319 Query 214030 ACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGCTCATGGA----G 214085 | |||||||| ||||| || || || |||| ||| | || ||| |||| Sbjct 225320 AAGTACCGTTGGTGCCCGCAATGTAAGAACCGGTGGCAC---GGATGC-GGTGGACGTTC 225375 Query 214086 AGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATG 214145 | || ||||| || || |||||| |||||||| || | ||| ||| || ||| Sbjct 225376 AAGCCGATGCCGCCAGCCATCTTGGAAATCATGGCACACGTCTTCAGAGTGTCATAGATA 225435 Query 214146 CCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTG-GA 214204 || | ||||| || || | | || | ||||||||| || |||| ||||||| | Sbjct 225436 CCCTCAATGCTATCGTCCTTCATGTCAACCAAGAAGCATGAAGACAGCT-GGGCCTGCGG 225494 Query 214205 CGAGCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAGAGGAGCCT 214264 | |||| |||||| || |||||| ||| ||| | | |||||| | || | ||| Sbjct 225495 GGTACCAGCGTTGAAGAGGGTGGGGGAGGCGTGGGTGAAGAACTTGCTCGACATGAGGTG 225554 Query 214265 GTAGGTCTCCAGGAC 214279 ||| ||||||||||| Sbjct 225555 GTATGTCTCCAGGAC 225569 >seq97 Length=261666 Score = 181 bits (200), Expect = 2e-40 Identities = 552/846 (65%), Gaps = 18/846 (2%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||||||||| | || | |||||||||||||| ||||| || | | || |||||||| Sbjct 4050 CTGGTAGTCGGCAACACGCTTCTCAAAGAAGTTGGTCTTGCCACCAAGAGAAATGTTCTC 3991 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAG-GCCCATCTGTTCCAGCA 47957 ||| ||| |||||||||| | || || | | | || ||| | | |||| Sbjct 3990 CATAAAGTCAAAGGGGTTGGAAGACTTGTAGATCT-TCTCGTTGCCGAGAGCAACAAGCA 3932 Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017 || | || || || |||||||||| | ||| | | || ||||||||| | |||| Sbjct 3931 GGCGGTCAGCAACAAACTCGATGTACTGCTTCATCAAGTTGGAGTTCATGCCCAGCAGGG 3872 Query 48018 ACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCT 48077 ||| | ||||| || | ||||| | ||| || | || || || | || | Sbjct 3871 CGCAGGGGAGAGCCTCGGTCAAGAACTCTTGCTCAATTCGGACAGCATCGGTGATGATGT 3812 Query 48078 ----GCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAG 48133 | | | | | || | | | || ||| ||||| || | | || |||| Sbjct 3811 CACGGATCACCTCCTTGCTG-GCGCGGTTCTTG---AGGTG---GGAGTGCAACAGGCAG 3759 Query 48134 GCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCA 48193 |||||||| |||||| || ||||| || ||||||| ||||||| ||| || || Sbjct 3758 GCAAAGTCGGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGGCCG 3699 Query 48194 GGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATG 48253 ||||||| || | || ||||||||||| || | || || | ||| ||||||||| Sbjct 3698 GGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGATGCAAAGGCGCCGCTGAAGAAGATA 3639 Query 48254 CCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATC 48313 ||||| || || || || || || | || | || |||| ||||||||| |||| Sbjct 3638 CCCTCGACGGCAGCAAAGGCAACCAGGCGCTGAGCAAAGGAAGAGTTCTTGTCCTGGATC 3579 Query 48314 CAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAG 48373 || | |||||||| |||||||| ||||| || || ||||| ||||| |||| Sbjct 3578 CACTTGATGGCCCAGTCAGCCTTCTTGCGAATGCAAGGGATAGTCTCAATGGCGTTGAAG 3519 Query 48374 AGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTCA 48433 || | |||| || | ||| | ||||| || ||| | ||| |||| Sbjct 3518 AGATAGTTGCGCTGGCTGTTCTCCTTGATGTAGGTGTCGATGAGCAGGGAGTAGGTCTCG 3459 Query 48434 GAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGC 48493 ||||| | ||||| || ||||||||| ||||||||| | ||||| | ||| Sbjct 3458 GAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGAGCCTCGGGGATCTGG 3399 Query 48494 ACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAG 48553 || || | ||| | ||| | ||| ||||| ||||| || ||||| || || |||||| Sbjct 3398 ACCTCGCCGCTGAAGCGCTCGACCAGGTTCTCGTTGACAATGCCATCAGAGGCGGCAAAG 3339 Query 48554 AAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGC----ATTCCAGCC 48609 ||||| |||| || | ||| | ||||| | | | || || |||||| | Sbjct 3338 AAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAG-GCGGTTGTTCCAGTC 3280 Query 48610 CTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTT 48669 || | || ||| |||||| | ||||| | ||||||||||| || || || || Sbjct 3279 GTGCAGATCCTTGGACAGGTCAATCTCTTCGGCGGTCCAGAAGGAAGCCTCGGCCTTCTT 3220 Query 48670 GTACAT 48675 |||||| Sbjct 3219 GTACAT 3214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931531554074880