Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001835465.1_202016-10-24] 107 sequences; 45,820,083 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq97 239 8e-58 seq93 230 4e-55 >seq97 Length=261666 Score = 239 bits (264), Expect = 8e-58 Identities = 391/562 (70%), Gaps = 5/562 (1%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| | |||||||||||||| | || ||||||||||||||||||||| ||| Sbjct 3205 ATCTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACCGCCGAAGAGATTGACCTG 3264 Query 25537 GCCAAGGACATGGACGGCTGGTAC----GCTCTATCCAAAGACGAGCAGCATTTTCTCAA 25592 ||||||| || ||| |||| || || || | | |||||| || | || || Sbjct 3265 TCCAAGGATCTGCACGACTGGAACAACCGC-CTGAACGATGACGAGAAGTACTTCATCTC 3323 Query 25593 GTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAG 25652 || | |||| |||||||| ||||||||||| || || |||||||| ||| |||| | Sbjct 3324 TCACATCCTGGCCTTCTTTGCCGCCTCTGATGGCATTGTCAACGAGAACCTGGTCGAGCG 3383 Query 25653 ATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCAT 25712 |||| | | || || ||| | ||||| || |||||||| |||||||| || Sbjct 3384 CTTCAGCGGCGAGGTCCAGATCCCCGAGGCTCGATGCTTCTACGGCTTCCAGATCATGAT 3443 Query 25713 CGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGC 25772 || || | ||||| ||| || || ||| | || ||||| | || | Sbjct 3444 GGAGAACATCCACTCCGAGACCTACTCCCTGCTCATCGACACCTACATCAAGGAGAACAG 3503 Query 25773 CGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCG 25832 | || | | || || ||||| ||| || || |||| | |||||| Sbjct 3504 CCAGCGCAACTATCTCTTCAACGCCATTGAGACTATCCCTTGCATTCGCAAGAAGGCTGA 3563 Query 25833 GTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTT 25892 |||||||| ||||||||| | | ||| | || | |||| |||| ||||| ||||| Sbjct 3564 CTGGGCCATCAAGTGGATCCAGGACAAGAACTCTTCCTTTGCTCAGCGCCTGGTTGCCTT 3623 Query 25893 TGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCA 25952 |||||| || ||||| ||||| |||||||| | ||||| ||||||||||||||||| | Sbjct 3624 TGCTGCCGTCGAGGGTATCTTCTTCAGCGGCGCCTTTGCATCCATCTTCTGGCTCAAGAA 3683 Query 25953 GAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCT 26012 | || ||||||||| ||| ||||||||||||||||||| | ||||||||||| Sbjct 3684 GCGAGGTCTCATGCCCGGCCTGACCTTTTCCAACGAGCTCATCTCTCGTGACGAGGGTCT 3743 Query 26013 CCACAGAGATTTTGCCTGCCTG 26034 |||| || |||||||||||| Sbjct 3744 GCACACCGACTTTGCCTGCCTG 3765 >seq93 Length=305044 Score = 230 bits (254), Expect = 4e-55 Identities = 844/1285 (66%), Gaps = 65/1285 (5%) Strand=Plus/Plus Query 221420 AGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGGAGA 221478 ||||||||||||||||| |||||||||||| |||||| || ||| | ||||| ||||| Sbjct 224503 AGGGCAGCGTGGTAGATTGTCTCAAAGATCTGCTTGTTCAG-CTCGCGAGCCTCAGGAGA 224561 Query 221479 AGTGAAGGGCATACGCAG--CATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCG 221536 || ||||| ||||| || ||||| | || || || ||||| || || | |||| Sbjct 224562 CTCAAAAGGCATGCGCAGGGCAAG-GAAAG-CATCAGCAAGACCCTGGACACCAACACCG 224619 Query 221537 ATGGGCCTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGT 221594 || || ||||| | | ||||| | ||| | || |||| || || || ||| || | Sbjct 224620 ATAGGTCTGTGACGCATGTTGCTGTTACGGGC-CTCCTGG-ACAGGGTAGTGGTTCACAT 224677 Query 221595 CGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGAT 221654 | || | ||||| ||||| | ||| |||||||| ||| | |||| |||| Sbjct 224678 CAATAATCTTGTTCAGGTTACG------GAC---AACCACCTTGGTGA-CTTC--GTGAA 224725 Query 221655 TGAACACCAACTC---GCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGC 221711 | || || || || |||| | | || ||| | || ||||| | Sbjct 224726 GCTTCTTAAAGTCATAGCACCCTTCGTTGTAG---TCGACATAGGCAGGGAGGGCCAAAG 224782 Query 221712 TGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGA 221771 ||||| ||| || || || ||||| || | |||| || ||||| || |||| Sbjct 224783 AGGCCAAGTTGCAGACAGCAACCTCATCAGGGGCACAGTACTCAATAATCTCAGTGCAGA 224842 Query 221772 GGTT---GCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCG- 221827 |||| ||||| |||||| ||||||| || || || |||||| ||| ||| | Sbjct 224843 GGTTAGAGCTGCG---GATGGTACCCAGGTTCTTCTGGTTGCTCTTGCGGTTG-CAGTGG 224898 Query 221828 TCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAG 221887 |||||||||||||| ||||| ||||||||| ||| || |||| || | ||| Sbjct 224899 TCCTTGTAGAGCATGAAGGGGTTGCCAGTCTCGGTCTGGGCTTCCAGGATGGAATACCAC 224958 Query 221888 AGTTCTCTG-GCGCTCACCGTCCTCTTGACTGCA-CCCTCGGTCTTTTCATAC--CCGGT 221943 || | |||| |||| | ||| | ||| | ||||| ||| || ||| | | Sbjct 224959 AGCT-TCTGAGCGCGGATAGTCTTGC-GACCACGTCCCTC---CTTCTCGTACTTCTCAT 225013 Query 221944 ATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACA 222003 | | ||| | | |||| || || || || | ||||| || ||| | ||| || Sbjct 225014 ACAAAGCCT--CGAACTCCTCGCCATAGCAGTCAGCAAGGCCAGGGCACTCGTTGGGGCA 225071 Query 222004 CATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAG 222063 ||| || |||||| | ||| | | || | || ||||||||| || || ||||| || Sbjct 225072 CATGAGCGTCCAGTCCAAGTTCTTCTCAACACGCTTCATGAAGAGATCGGGAATCCAGAG 225131 Query 222064 CGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAA 222123 || | || | || | | || ||||||| |||| ||| || | ||||| | Sbjct 225132 AGCAAGGAATAAGTCGCGAGCACGGACCTCCTCCTTACCGTGGTTCTTGCGGAGATCAAG 225191 Query 222124 AAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTT 222183 |||||||| | ||||||||||| |||||||| |||| ||| | || || || ||||| Sbjct 225192 GAACTCAAAGACATCAGCGTGCCATGGCTCCAGGTAGATGGCAAAGGCACCAGGACGCTT 225251 Query 222184 GTTGCCACCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCA 222242 |||||||||||| || || || ||| | |||||||| ||||| | || | | Sbjct 225252 GTTGCCACCCTGGTCGACGTATCT-GGCAGTGTTGTTGAAGACTCGAAGCATGGGAATGA 225310 Query 222243 GTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTAC--T 222300 |||||||| ||||||||||||| |||||| | |||| ||| | || | | | Sbjct 225311 TACCGTTGGAAGTACCGTTGGTGCCCGCAATGTAAGAACCGGTGGCAC---GGATGCGGT 225367 Query 222301 GG-CAGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGT 222359 || | || |||||| || || || || || |||||||| || |||| ||||||| Sbjct 225368 GGACGTTCAAGCCGATGCCGCCAGCCATCTTGGAAATCATGGCACACGTCTTCAGAGTGT 225427 Query 222360 CCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAG 222419 | ||| ||||| || || ||||| | || | || || || || |||| ||| | Sbjct 225428 CATAGATACCCTCAATGCTATCGTCCTTCATGTCAACCAAGAAGCATGAAGACAGCTGGG 225487 Query 222420 ATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACA 222479 | | || || ||||| || || ||||| |||||| || ||| | || |||| Sbjct 225488 CCTGCGGGGTACCAGCGTTGAAGAGGGTGGGGGAGGCGTGGGTGAAGAACTTGCTCGACA 225547 Query 222480 TCAGATCGTACGTCTCTACGACTCTGGCGATGTTGTC-CCCGTGAATCTGC--ATGGCGC 222536 | || | ||| ||||| | ||| | | |||| ||| ||| || ||| | || Sbjct 225548 TGAGGTGGTATGTCTCCAGGACACGCTCAATGTCGTCTCCCCAGA---TGCCAACAGCCA 225604 Query 222537 ATCTCATGTACATGTACTGGGGCCTCTCCACA--GGACCCTTGGAGCTGGAGAGCAGGTA 222594 || ||| ||||| ||| || | ||| ||| || | |||| || ||||| Sbjct 225605 CTCGCATAATCATGTGCTGTGGTCGCTCAACAATCTTGCCATCAAGCT--TCAGGAGGTA 225662 Query 222595 CGATTTTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCAC 222654 || |||| ||||||||| || ||||| | | || ||||||| | | || | Sbjct 225663 TGACCGCTCCAAAGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCTCGATCATACACAAT 225722 Query 222655 GGCGGCGTCCAGCTCCGACTTGTGC 222679 ||| | ||| |||||| ||||||| Sbjct 225723 GGCAGAGTCGAGCTCCTCCTTGTGC 225747 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 221116 GTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGG 221175 ||| || || ||||| || || | || || | | |||||| | ||| || ||| | || Sbjct 224208 GTTGACAACCTGGAACTCGCCGGCAAGGACACGGCGCTGGTAGATGTTGGAGGTGTAGGG 224267 Query 221176 TTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCAC 221235 |||| || ||| ||||||||||||||||| | |||||||| || ||||| || || || Sbjct 224268 CTCGAAGCACTCATTGTTGCCCAGGATCTGGGAAGTGCTGGCAGTTGGCATAGGGGCAAC 224327 Query 221236 CAGCAGACTGTTGCGCA 221252 |||| |||||||||| Sbjct 224328 GAGCAAGCTGTTGCGCA 224344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928843557670080