Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001835465.1_202016-10-24] 107 sequences; 45,820,083 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq93 250 3e-61 seq97 118 1e-21 >seq93 Length=305044 Score = 250 bits (276), Expect = 3e-61 Identities = 1011/1565 (65%), Gaps = 61/1565 (4%) Strand=Plus/Minus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 |||||| ||||| | ||||| || || | |||||| || || |||||||| |||| Sbjct 225626 CCACAGCACATGATTATGCGAGTGGCTGTTGGCATCTGGGGAGACGACATTGAGCGTGTC 225567 Query 75272 TTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCCTCT 75329 ||||||||||| || ||||| |||| | | ||| ||||| | || ||||||| Sbjct 225566 CTGGAGACATACCACCTCATGTCGAGCAAGTTCT--TCACCCACGCCTCCCCCACCCTCT 225509 Query 75330 TCAATGCTGGTACACCA-AGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAG 75388 |||| |||||||| || || || ||| |||| |||||| | | | || ||||| Sbjct 225508 TCAACGCTGGTACCCCGCAGGCC-CAGCTGTCTTCATGCTTCTTGGTTGACATGAAGGAC 225450 Query 75389 GACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCT 75448 || || | |||||||||| ||||| | | |||||| || || ||| |||| Sbjct 225449 GATAGCATTGAGGGTATCTATGACACTCTGAAGACGTGTGCCATGATTTCCAAGATGGCT 225390 Query 75449 GGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACA 75508 || || || || || || |||| | | |||| ||| ||| ||| || Sbjct 225389 GGCGGCATCGGCTTGAACGTCCACCGCATCCGTGCCACCGGTTCTTACATTGCGGGCACC 225330 Query 75509 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 75568 || ||| || | ||||| ||||| |||||||| || || ||| ||| || | || Sbjct 225329 AACGGTACTTCCAACGGTATCATTCCCATGCTTCGAGTCTTCAACAACACTGCCAGATAC 225270 Query 75569 GTAAATCAAGCGGG------GCGTCGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGG 75622 || | || | || ||||| || || | || ||||| |||| |||||| Sbjct 225269 GTCGACCAGGGTGGCAACAAGCGTCCT---GGTGCCTTTGCCATCTACCTGGAGCCATGG 225213 Query 75623 CATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGG 75682 || || ||| || | ||||||||||| | || ||||| ||| | || |||| || | Sbjct 225212 CACGCTGATGTCTTTGAGTTCCTTGATCTCCGCAAGAACCACGGTAAGGAGGAGG-TCCG 225154 Query 75683 TG-TAGAGATCTCTTTTCATCC-CTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGG 75740 || | | || || || | | | || |||||||| || || ||||||||||| |||||| Sbjct 225153 TGCTCGCGA-CTTATTCCTTGCTCTCTGGATTCCCGATCTCTTCATGAAGCGTGTTGAGA 225095 Query 75741 AGGG--TGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGAC-GCGG 75797 || ||| | ||| | || | || || || || || || || | ||| || Sbjct 225094 AGAACTTGGAC--TGGACGCTCATGTGCCCCAACGAGTGCCCTGGCCTTGCTGACTGCTA 225037 Query 75798 TGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGC---CAATG 75854 ||| |||||||| || || | || ||||| || ||||||| | | ||| Sbjct 225036 TGGC-GAGGAGTTCGAGGCTTTGTATGAGAAGTACGAGAAGGAGGGACGTGGTCGCAA-- 224980 Query 75855 CGACTGTACCAGCCGCCGATGTT-TGGAAGGCTATTCTCAAATCACAGACGGAGACTGGA 75913 |||| | | || | || | | ||| | | || || || | ||||| |||||||| Sbjct 224979 -GACTATCCGCGCT-CAGAAGCTGTGGTATTCCATCCTGGAAGCCCAGACCGAGACTGGC 224922 Query 75914 ACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGA 75973 | || | ||||| |||||||| || ||| ||||| ||||| ||||| |||| Sbjct 224921 AACCCCTTCATGCTCTACAAGGACCACTGCAACCGCAAGAGCAACCAGAAGAACCTGGGT 224862 Query 75974 ACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACG 76033 || ||| ||||| || || ||||| || ||| | |||||| | |||||| Sbjct 224861 ACCATCCGCAGCTCTAACCTCTGCACTGAGATTATTGAGTACTGTGCCCCTGATGAGGTT 224802 Query 76034 GCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGA-GACTCGCAC 76092 ||||| ||||| ||||| || | ||||| || |||||| | | | || | | Sbjct 224801 GCTGTCTGCAACTTGGCCTCTTTGGCCCTCCCTGCCTATGTCGACTACAACGAAGGGTGC 224742 Query 76093 TTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGT 76152 | | || | | | || ||||| ||| |||| ||| | ||| | || || ||| | Sbjct 224741 TAT-GACTTTAAGAAGCTTCACGAAGTCACCAAGGTGGTTGTCCGTAACCTGAACAAGAT 224683 Query 76153 CATTGACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATATGCGACACAGACC 76212 ||||| || || || || || || || || || ||||| |||||||| Sbjct 224682 TATTGATGTGAACCACTACCCTGTCCAGGAGGCCCGTAACAGCAACATGCGTCACAGACC 224623 Query 76213 TATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCA----- 76267 ||| ||| | ||||| || ||||| || |||| || | |||| || |||| Sbjct 224622 TATCGGTGTTGGTGTCCAGGGTCTTGCTGATGCTTTCCT----TGCC-CTGCGCATGCCT 224568 Query 76268 TTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCA 76327 ||||| || ||| || ||| |||| | |||||||| || || || ||||| Sbjct 224567 TTTGAGTCTCCTGAGGCTCGCGAGCTGAACAAGCAGATCTTTGAGACAATCTACCACGCT 224508 Query 76328 TCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGT 76387 |||| ||||| | || | || | | | | || |||| | |||| |||| Sbjct 224507 GCCCTTGAGGCTTCTATGGAGATTGCCAAGGTCGAGGGCCCCTACCAATCATTCAAGGGA 224448 Query 76388 TCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGCT-CAA 76446 || || || || | || | ||||| || || ||||||| | || || || || | | Sbjct 224447 TCACCTGCATCTGAGGGCATCCTTCAATTCGACATGTGGG-ATGTCAAGCC---CTCCGA 224392 Query 76447 C---TACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCT 76503 | | || ||||| ||||||||| | ||||||||| | ||| | || ||||| | Sbjct 224391 CTTGTGGGAGTGGGACTCTCTCAAGGAGCAGATCAAGGAGCACGGTGTGCGCAACAGCTT 224332 Query 76504 TTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTT 76563 | | || || |||||||| ||| ||| | || ||| |||| || ||||| ||||| Sbjct 224331 GCTCGTTGCCCCTATGCCAACTGCCAGCACTTCCCAGATCCTGGGCAACAATGAGTGCTT 224272 Query 76564 TGAACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGT 76623 || || ||||| | |||||||||| | | | ||| || || ||||| |||| Sbjct 224271 CGAGCCCTACACCTCCAACATCTACCAGCGCCGTGTCCTTGCCGGCGAGTTCCAGGTTGT 224212 Query 76624 CAACAAGCACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAGGA 76683 |||| || |||| ||||| | | ||| ||||||||| | | |||||| | Sbjct 224211 CAACCCTTGGCTTCTCAAGGACCTGGTCGACACTGGCCTCTGGTCCGATGCCATGAAGAA 224152 Query 76684 TC----TCATGGTGAAAGCGGGTGGTTCCATTCAAAATATCTCAGATATCCCAGATGATA 76739 | | || ||| | | || |||||||| || ||| | | ||||| || |||| Sbjct 224151 CCGTATTATTGCTGAGAAC----GGCTCCATTCAGAACATCCCCAACATCCCCGAGGATA 224096 Query 76740 TCAAG 76744 ||||| Sbjct 224095 TCAAG 224091 >seq97 Length=261666 Score = 118 bits (130), Expect = 1e-21 Identities = 532/825 (64%), Gaps = 41/825 (5%) Strand=Plus/Plus Query 64714 TGGACTGCGGAAGAAGTTGATTTGTCCAAAGATCTTGACGACTGGAAGACCC---TGAAT 64770 ||||| || ||||| |||| ||||||| ||||| |||||||||| | || |||| Sbjct 3241 TGGACCGCCGAAGAGATTGACCTGTCCAAGGATCTGCACGACTGGAACAACCGCCTGAAC 3300 Query 64771 GAAAATGAAAAGAAATTCATAAAGTACATCCTGGCATTCTTTGCTGGGTCCGATGGAATT 64830 || | || ||| | ||||| |||||||||| |||||||| | || ||||| ||| Sbjct 3301 GATGACGAGAAGTACTTCATCTCTCACATCCTGGCCTTCTTTGCCGCCTCTGATGGCATT 3360 Query 64831 GTTTTTGAGAATATCAATAA-CAATTTTGCGGATGAAGTGCAGATAAGCGAAGCGCGCTC 64889 || ||||| | | | || |||| || || ||||| ||| || || | Sbjct 3361 GTCAACGAGAACCTGGTCGAGCGCTTCAGCGGC-GAGGTCCAGATCCCCGAGGCTCGATG 3419 Query 64890 ATTCTACGCATATCAATGCCATAATGAA-ATGGTTCATGGCGAAACATATTCAAAATTGA 64948 ||||||| | || | ||| ||| | | | || ||| || || || | | Sbjct 3420 CTTCTACGGCT-TCCAGATCATGATGGAGAACATCCACTCCGAGACCTACTCCCTGCTCA 3478 Query 64949 TTGACAAATACATTAAGGATGGATCTGAAAAGAAGCAGTTAT---TTGAA-GCCATCCAA 65004 | |||| ||||| ||||| || | | | ||| ||| || || ||||| | Sbjct 3479 TCGACACCTACATCAAGGA--GAACAGCCAGC--GCAACTATCTCTTCAACGCCATTGAG 3534 Query 65005 ACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTT---GACACAAAG 65061 ||| | || || ||| |||||||| | ||||| || || ||| | |||| || Sbjct 3535 ACTATCCCTTGCATTCGCAAGAAGGCTGACTGGGCCATCAAGTGGATCCAGGACAAGAAC 3594 Query 65062 TCTCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCC 65121 ||| ||||| || ||||||| |||| ||||| || ||||||||||||||| | Sbjct 3595 TCT---TCCTTTGCTCAGCGCCTGGTTGCCTTTGCTGCCGTCGAGGGTATCTTCTTCAGC 3651 Query 65122 GGGTCATTCTGC-GCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTT 65180 || | || ||| | || | ||| | |||||||| ||||||||||| ||||| ||| Sbjct 3652 GGCGCCTT-TGCATCCATCTTCTGGCTCAAGAAGCGAGGTCTCATGCCCGGCCTGACCTT 3710 Query 65181 CTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGC---CGTGGAGCT 65237 || || || || || || || || |||||||| ||| || ||||| | || || Sbjct 3711 TTCCAACGAGCTCATCTCTCGTGACGAGGGTCTGCACACCGACTTTGCCTGCCTGTTGCA 3770 Query 65238 CTTCAAGACTTTGCGTAATAGACCCACTACCGAAACTATCCACGCCATCGTGAAAGAGGC 65297 || | || | | || | ||| | || |||| | |||| | | || || Sbjct 3771 CTCC--CACCTCAAG-AACCGCGCCAGCAAGGAGGTGATCCGTGACATCATCACCGATGC 3827 Query 65298 GGTTGAGATTGAGAAAGGGTTCATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAA 65357 || |||||| ||| |||| | || || ||||| || || | || ||||| Sbjct 3828 TGTCCGAATTGAGCAAGAGTTCTTGACCGAGGCTCTCCCCTGCGCCCTGCTGGGCATGAA 3887 Query 65358 CTCTGAGAAGATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGG 65417 ||| | |||| ||||||| |||| ||| | || || || || |||| Sbjct 3888 CTCCAACTTGATGAAGCAGTACATCGAGTTTGTTGCTGACCGCCTGCT------TGTTGC 3941 Query 65418 GGT--GCCAC----CCATTTGGAACGCGAAGAATCCATTTGACTTTATGGAAAACATTAG 65471 | || || || | || | || || |||||||||||||| |||||| Sbjct 3942 TCTCGGCAACGAGAAGATCTACAAGTCTTCCAACCCCTTTGACTTTATGGAGAACATTTC 4001 Query 65472 CCTTGATGGGAAGACCAACTTCTTTGAGAAGCGAGTTGGGGACTA 65516 |||| ||| ||||||||||||||||||||||| |||| ||||| Sbjct 4002 TCTTGGTGGCAAGACCAACTTCTTTGAGAAGCGTGTTGCCGACTA 4046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596568802088160