Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001835465.1_202016-10-24] 107 sequences; 45,820,083 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq97 143 8e-29 seq41 120 9e-22 seq93 111 5e-19 seq50 96.9 1e-14 >seq97 Length=261666 Score = 143 bits (158), Expect = 8e-29 Identities = 248/355 (70%), Gaps = 4/355 (1%) Strand=Plus/Plus Query 133305 CCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACAT 133364 |||| || || ||| || || | ||||| |||||| || ||||| || || | Sbjct 3407 CCGAGGCTCGATGCTTCTACGGCTTCCAGATCATGATGGAGAACATCCACTCCGAGACCT 3466 Query 133365 ATTCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAGCACAAACTATTCAACG 133424 | || || || || || |||||||| || | | |||| || | || ||||||| Sbjct 3467 ACTCCCTGCTCATCGACACCTACATCAAGGAGAACAGCCAGCGCAACTATCTCTTCAACG 3526 Query 133425 CCATTAGCGAAT-TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAG 133483 ||||| | || | | ||||| ||| ||||| |||||||||| || || ||||||||| Sbjct 3527 CCATT-GAGACTATCCCTTGCATTCGCAAGAAGGCTGACTGGGCCATCAAGTGGATCCAG 3585 Query 133484 GACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAttttt 133543 |||||| | |||||| || || ||||| ||||||| || ||||| || || Sbjct 3586 GACAAGAACTCTTCCTTTGCTCAGCGCCTGGTTGCCTTTGCTGCCGTCGAGGGTATCTTC 3645 Query 133544 ttCAGTGGTGCGTTCTGC-TCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACT 133602 ||||| || || || ||| || || || ||||| || ||||| ||| | | || || || Sbjct 3646 TTCAGCGGCGCCTT-TGCATCCATCTTCTGGCTCAAGAAGCGAGGTCTCATGCCCGGCCT 3704 Query 133603 GTGTTTTTCTAACGAACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCC 133657 | ||||| ||||| || || || | ||||||| || |||||||| |||||| Sbjct 3705 GACCTTTTCCAACGAGCTCATCTCTCGTGACGAGGGTCTGCACACCGACTTTGCC 3759 >seq41 Length=363786 Score = 120 bits (132), Expect = 9e-22 Identities = 192/273 (70%), Gaps = 2/273 (1%) Strand=Plus/Minus Query 302572 TCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCT 302631 ||||||| | ||||| | ||| | |||||||||||| ||| || || || || || Sbjct 177495 TCTTCCAGAGCCTTGACGAGACGTCTCTGAATATAACCTGTTTCAGCAGTCTTGACGGCA 177436 Query 302632 GTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AG 302690 |||||||| ||||| |||||||| |||| || ||||| || | || || ||| || Sbjct 177435 GTATCAATGAGACCTTCACGACCAGCCATGGCGTGGAAAAAGAATTCAGAAGG-CGTAAG 177377 Query 302691 CCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGT 302750 || | | | ||| |||| ||||| ||||| ||||| || || | ||| ||||| Sbjct 177376 ACCACGGAGGTAAGAGTTCTCGACGAAGCCACGGGCCTCAGGTGAGTAATCGTCTTTGGT 177317 Query 302751 AAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTG 302810 || || ||||| || | || | |||| |||| ||||||||||| || || |||| Sbjct 177316 GAAATGGGGCAGAGTTCGGTATTTGAAGCCAAATGGAATACGCTTTCCTTCGACAATCTG 177257 Query 302811 CTGTCCCAGGCACGAAATCATCTGCGAAATATT 302843 |||||| | || ||||||| ||||| || Sbjct 177256 CTGTCCTACAAGCGCCGTCATCTGGGAAATGTT 177224 >seq93 Length=305044 Score = 111 bits (122), Expect = 5e-19 Identities = 337/519 (65%), Gaps = 9/519 (2%) Strand=Plus/Plus Query 155630 GTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTT 155689 ||| || | ||||||| ||| |||||||| || |||||| || | ||||||||||| Sbjct 224820 GTACTCAATAATCTCAGTGCAGAGGTTAGAGCTGCGGATGGTACCCAGGTTCTTCTGGTT 224879 Query 155690 AGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGC 155749 || | ||| || |||||||| || ||| | ||| | || ||||| |||| || Sbjct 224880 GCTCTTGCGGTTGCAGTGGTCCTTGTAGAGCATGAAGGGGTTGCCAGTCTCGGTCTGGGC 224939 Query 155750 GTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGA 155809 ||||| || ||| || | | || || |||| | || ||| Sbjct 224940 TTCCAGGATGGAATACCACAGCTTCTGAGCGCGGATAGTCTTGCGACCACGTCCCTCCTT 224999 Query 155810 CTCATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCA 155869 ||| || ||| ||||| | | | ||||| || || || ||| || |||||||| Sbjct 225000 CTCGTACTTCTCATACAAAGCCTCGAACTCCTCGCCATAGCAGTCAGCAAGGCCAGGGCA 225059 Query 155870 CTTATCGGGGCAAAACAGCGACCAA---ATTTTATTACCGATTACACGCTCCATAAATAC 155926 || | |||||| | |||| ||| | || || | | |||||| ||| || | Sbjct 225060 CTCGTTGGGGCACATGAGCGTCCAGTCCAAGTTCTTCTCAA---CACGCTTCATGAAGAG 225116 Query 155927 ATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATT 155986 ||| ||| | |||| ||| | ||| | || |||||| | ||||| || Sbjct 225117 ATCGGGAATCCAGAGAGCAAGGAATAAGTCGCGAGCACGGACCTCCTCCTTACCGTGGTT 225176 Query 155987 CTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAA 156046 ||| || || || | ||| || | ||||| || ||||||||| || || ||||| Sbjct 225177 CTTGCGGAGATCAAGGAACTCAAAGACATCAGCGTGCCATGGCTCCAGGTAGATGGCAAA 225236 Query 156047 ACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACC 156103 |||| | |||| |||||||| || || || | ||||| || |||||||| | Sbjct 225237 GGCACCAGGACGCTTGTTGCCACCCTGGTCGACGTATCTGGCAGTGTTGTTGAAGACTCG 225296 Query 156104 TAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCC 156142 ||||| ||||| ||||| |||||||| || ||||| || Sbjct 225297 AAGCATGGGAATGATACCGTTGGAAGTACCGTTGGTGCC 225335 >seq50 Length=288516 Score = 96.9 bits (106), Expect = 1e-14 Identities = 125/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGA 251544 |||||||| | ||||||||||||||| |||||||| ||||| |||||||||||||| | | Sbjct 157724 GCACCGTGAGCAATCATACAATCACGTTCCATTTCTCCGAATCGAAGACCACCATCTCTA 157783 Query 251545 GCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATGT 251604 || | |||||| ||||||| | || | | || ||||| || ||| || Sbjct 157784 GCACGACCCTCCACAGGCTGTCTGGTCATGATCTGCACGGGACCACGGGCACGGGCGTGA 157843 Query 251605 TGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAA 251657 ||| || | ||||| || ||| ||||||||| ||| || |||| ||| Sbjct 157844 ATCTTGTCGTCCACCATGTGACGGAGTCGCTGGTAGTATGTCGGTCCGAAGAA 157896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471815582230059