Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001835465.1_202016-10-24] 107 sequences; 45,820,083 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq93 154 2e-31 seq97 129 7e-24 seq61 96.9 4e-14 >seq93 Length=305044 Score = 154 bits (170), Expect = 2e-31 Identities = 222/313 (71%), Gaps = 0/313 (0%) Strand=Plus/Plus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 |||||||||||| | || |||| ||| ||||| || |||||||| | || |||||||| Sbjct 225261 CTGGTCGACGTATCTGGCAGTGTTGTTGAAGACTCGAAGCATGGGAATGATACCGTTGGA 225320 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 |||||||||||||| | ||| | |||| ||| || | ||| || ||||| Sbjct 225321 AGTACCGTTGGTGCCCGCAATGTAAGAACCGGTGGCACGGATGCGGTGGACGTTCAAGCC 225380 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 ||||||||| ||| |||||| || | || ||| || || ||||| ||||| ||||| Sbjct 225381 GATGCCGCCAGCCATCTTGGAAATCATGGCACACGTCTTCAGAGTGTCATAGATACCCTC 225440 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 || ||| |||||||||| || | ||||| || || || | |||| || || Sbjct 225441 AATGCTATCGTCCTTCATGTCAACCAAGAAGCATGAAGACAGCTGGGCCTGCGGGGTACC 225500 Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364 ||||||||||| ||||| | || |||||| |||| | ||||||| || ||| || Sbjct 225501 AGCGTTGAAGAGGGTGGGGGAGGCGTGGGTGAAGAACTTGCTCGACATGAGGTGGTATGT 225560 Query 1630365 GGCGAGCACGCGC 1630377 | || || ||| Sbjct 225561 CTCCAGGACACGC 225573 Score = 120 bits (132), Expect = 4e-21 Identities = 92/109 (84%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 ||| |||| | ||| |||||||||||||| | || |||| |||||| | ||||| ||| Sbjct 92368 GCCTCCAATTTCCTTGACATCAAGCCTCTCTTGGACGTTGGCTGCAAGACAGTGGCAAAC 92427 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294 ||||||||||||||||| |||||||| ||||||||||| || ||||||| Sbjct 92428 ATGATCAAGGGCAAGTCTCCCGAGGAAATCCGCAAGACTTTCAACATCA 92476 >seq97 Length=261666 Score = 129 bits (142), Expect = 7e-24 Identities = 207/290 (71%), Gaps = 13/290 (4%) Strand=Plus/Minus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||| ||||| ||| ||| | |||||| ||||| |||||||||||||| || ||||| Sbjct 3741 ACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGGCCGGGCATGAGACCTCGCTT 3682 Query 869239 CTTGAGCCAAAAGATGG-CGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAA 869297 ||||||||| ||||||| ||| || ||| ||| ||||| ||||||||||| |||| Sbjct 3681 CTTGAGCCAGAAGATGGATGCA-AAGGCGCCGCTGAAGAAGATACCCTCGACGGCAGCAA 3623 Query 869298 AGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTG---TTGATCCACTTCATCG 869354 || | | || |||| |||||| | ||| | |||| | ||||||||| || | Sbjct 3622 AGGCAACCAGGCGCTGAGCAAAG--GAAGAG----TTCTTGTCCTGGATCCACTTGATGG 3569 Query 869355 CCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCT 869414 ||||||| ||||| || | | | || | || || |||||| ||||| | || Sbjct 3568 CCCAGTCAGCCTTCTTGCGAATGCAAGGGATAGTCTCAATGGCGTTGAAGAGATAGTTGC 3509 Query 869415 TTTCGGCCG-GGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463 | ||| | ||||||| ||||||||||| || || || |||||||| Sbjct 3508 GCT-GGCTGTTCTCCTTGATGTAGGTGTCGATGAGCAGGGAGTAGGTCTC 3460 Score = 109 bits (120), Expect = 7e-18 Identities = 219/322 (68%), Gaps = 7/322 (2%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| ||| | || ||| ||| || |||||||||||||| | || || || Sbjct 4055 GCCTTCTGGTAGTCGGCAACACGCTTCTCAAAGAAGTTGGTCTTGCCACCAAGAGAAATG 3996 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | || ||||||| | ||||||| ||| ||| ||||| | | Sbjct 3995 TTCTCCATAAAGTCAAAGGGGTTGGAAGACTTGTAGATCTTCTCGTTGCCGAGAGCAACA 3936 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 ||||||||||| || ||||||||||||||||| ||| | | || ||||||||| | Sbjct 3935 AGCAGGCGGTCAGCAACAAACTCGATGTACTGCTTCATCAAGTTGGAGTTCATGCCCAGC 3876 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 || || || || | |||| ||| ||||||| ||| || ||| || ||| |||| Sbjct 3875 AGGGCGCAGGGGAGAGCCTCGGTCAAGAACTCTTGCTCAATTCGGACAGCATCGGTGATG 3816 Query 868931 ATCTGCCTGGGCACGTC---GGCCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGGCAG 868987 || | | | ||| || | | | | || |||| | | | || | ||||||| Sbjct 3815 ATGTCACGGATCACCTCCTTGCTGGCGCGGTTCTTGAGGTG---GGAGTGCAACAGGCAG 3759 Query 868988 GCAAAGTCGCAGTGCA-ACCCT 869008 ||||||||| ||||| ||||| Sbjct 3758 GCAAAGTCGGTGTGCAGACCCT 3737 >seq61 Length=897646 Score = 96.9 bits (106), Expect = 4e-14 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 18358 CCGCGGCCCTCACACGCCGACTACACCTACATGGCCAAGTACGGCATCAAGGCGTCGTCG 18417 ||||| ||||| ||||| |||| || ||| ||| ||||| || |||||||| || || Sbjct 507929 CCGCGCCCCTCCCACGCAGACTGGACTTACCTGGAGAAGTATGGTATCAAGGCCTCCTCT 507870 Query 18418 GGCGGAGGCCGGTCGTCTGCCCGCGAGACCCTCATGCGCGTCGCCGCCGGCGCGGTCGCC 18477 ||||| |||||| ||||||||||| | |||||||||||||| || || ||| Sbjct 507869 GGCGGCGGCCGGAGCAGCGCCCGCGAGACTATTGCCCGCGTCGCCGCCGGTGCTGTTGCC 507810 Query 18478 GAGAAATGGCT 18488 ||||| ||||| Sbjct 507809 GAGAAGTGGCT 507799 Score = 86.0 bits (94), Expect = 8e-11 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 19095 GGCCTCGGCGAGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCG 19154 ||||||||||||||||||||||| ||| | ||||| ||||||||||| || |||| Sbjct 507506 GGCCTCGGCGAGCCGTGCTTTGATAAGCTTGAGGCTCTCCTCGCCCACGCTATTATGTCT 507447 Query 19155 ATCCCGGCCACCAAGGGATTCGAGATTGGC 19184 || || || || ||||| || ||||||||| Sbjct 507446 ATTCCTGCTACTAAGGGCTTTGAGATTGGC 507417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107130419078919