Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001835465.1_202016-10-24] 107 sequences; 45,820,083 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq1 93.3 4e-14 seq47 82.4 7e-11 >seq1 Length=17084797 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | || || || ||||| || ||||| || ||||| || || | | Sbjct 3412102 ATGCAAATCTTTGTCAAGACCCTGACCGGCAAGACTATCACCCTCGAGGTGGAGTCTTCT 3412043 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || |||||||||||||| || || || ||||| || || Sbjct 3412042 GATACCATCGACAACGTCAAGTCCAAGATCCAAGACAAGGAGGGCATTCCTCCTGACCAG 3411983 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || |||||||| || || || |||||||| || | | | || || || ||| Sbjct 3411982 CAGCGCTTGATCTTCGCTGGTAAGCAGCTGGAAGACGGTCGCACCTTGAGCGACTACAAC 3411923 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || || ||||| ||||| |||||||| Sbjct 3411922 ATCCAGAAGGAGAGCACACTGCACTTGGT 3411894 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| || | || || || || || || || || || || || || || | | Sbjct 1761057 GATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTC 1761116 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || | || || |||||||| ||||| || || || || || || || Sbjct 1761117 CGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCA 1761176 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || || |||||||| || || || |||||||||||| | | | || || || || Sbjct 1761177 GCAGCGATTGATCTTCGCTGGTAAGCAGCTGGAGGATGGCCGCACCCTGAGCGACTACAA 1761236 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| || ||||| || || || ||| |||| |||| |||| || || Sbjct 1761237 CATCCAGAAGGAGTCTACCCTCCACCTGGTCCTGCGCCTGCGTGGTGG 1761284 >seq47 Length=144723 Score = 82.4 bits (90), Expect = 7e-11 Identities = 123/175 (70%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 24719 AAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACG 24778 || || || || || || || || || || || || || || ||||||| | || | Sbjct 138568 AAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACGATCGACAAT 138509 Query 24779 GTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTT 24838 || || |||||||| ||||| || || || || || || || || || ||||||||| Sbjct 138508 GTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGATTGATCTTT 138449 Query 24839 GCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGG 24893 || || || ||||| |||||| ||| | |||| || || ||||| || |||| Sbjct 138448 GCTGGCAAGCAGCTCGAGGATGGCCGAACCCTGTCCGACTACAACATCCAGAAGG 138394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449896998261960