Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001835465.1_202016-10-24] 107 sequences; 45,820,083 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq97 170 3e-36 seq93 123 4e-22 seq98 98.7 2e-14 >seq97 Length=261666 Score = 170 bits (188), Expect = 3e-36 Identities = 236/330 (72%), Gaps = 9/330 (3%) Strand=Plus/Minus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||| ||||| ||| ||| | |||||| |||| |||||||||||||| || ||||| Sbjct 3741 ACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGGCCGGGCATGAGACCTCGCTT 3682 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 ||||||||| ||||||| || ||| ||| ||||| ||||||||||| ||||| Sbjct 3681 CTTGAGCCAGAAGATGGATGCAAAGGCGCCGCTGAAGAAGATACCCTCGACGGCAGCAAA 3622 Query 794460 GCCGACGAGCCGCTCGGCAAA---AGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGC 794516 | | || || |||| ||||| || || | | ||| ||||||||| || || Sbjct 3621 GGCAACCAGGCGCTGAGCAAAGGAAGAGTTCTTGTCCTG------GATCCACTTGATGGC 3568 Query 794517 CCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTT 794576 ||| || ||||| || | | | || | || || |||||| ||||| | || Sbjct 3567 CCAGTCAGCCTTCTTGCGAATGCAAGGGATAGTCTCAATGGCGTTGAAGAGATAGTTGCG 3508 Query 794577 CTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTT 794636 || | ||||||| ||||||||||||||| || ||||||||||| ||||||||||| Sbjct 3507 CTGGCTGTTCTCCTTGATGTAGGTGTCGATGAGCAGGGAGTAGGTCTCGGAGTGGATGTT 3448 Query 794637 TTCGATGGCGATCTGGAAGCCATAAAAGCA 794666 || || |||||||||||| || ||||| Sbjct 3447 CTCCATCATGATCTGGAAGCCGTAGAAGCA 3418 Score = 100 bits (110), Expect = 5e-15 Identities = 172/250 (69%), Gaps = 0/250 (0%) Strand=Plus/Minus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 |||| || ||||| || ||| | || ||| ||| || |||||||||||||| | | Sbjct 4063 TGACACCGGCCTTCTGGTAGTCGGCAACACGCTTCTCAAAGAAGTTGGTCTTGCCACCAA 4004 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010 | || || |||||| | || ||||||| | | |||| ||||||| |||| Sbjct 4003 GAGAAATGTTCTCCATAAAGTCAAAGGGGTTGGAAGACTTGTAGATCTTCTCGTTGCCGA 3944 Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070 | | ||||||||||||| || || || || |||||||| ||| | | || ||||| Sbjct 3943 GAGCAACAAGCAGGCGGTCAGCAACAAACTCGATGTACTGCTTCATCAAGTTGGAGTTCA 3884 Query 794071 TGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCT 794130 |||| | || || ||| || | |||| | | ||||||| ||| || ||| || | Sbjct 3883 TGCCCAGCAGGGCGCAGGGGAGAGCCTCGGTCAAGAACTCTTGCTCAATTCGGACAGCAT 3824 Query 794131 CGATGATGAT 794140 || ||||||| Sbjct 3823 CGGTGATGAT 3814 >seq93 Length=305044 Score = 123 bits (136), Expect = 4e-22 Identities = 182/258 (71%), Gaps = 0/258 (0%) Strand=Plus/Plus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 ||||||||| || | || |||| ||| ||||| || |||||||| | | |||||||| Sbjct 225261 CTGGTCGACGTATCTGGCAGTGTTGTTGAAGACTCGAAGCATGGGAATGATACCGTTGGA 225320 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 |||||||||||||| | ||| | || | ||| || | ||| || ||||| Sbjct 225321 AGTACCGTTGGTGCCCGCAATGTAAGAACCGGTGGCACGGATGCGGTGGACGTTCAAGCC 225380 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 ||||||||| ||| |||||| || | || ||| | ||||| || || ||||| ||||| Sbjct 225381 GATGCCGCCAGCCATCTTGGAAATCATGGCACACGTCTTCAGAGTGTCATAGATACCCTC 225440 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 || ||| |||||||||| | || ||||| || || || | ||| || || Sbjct 225441 AATGCTATCGTCCTTCATGTCAACCAAGAAGCATGAAGACAGCTGGGCCTGCGGGGTACC 225500 Query 2073780 GGCATTGAAGAGCGTGGG 2073797 || |||||||| ||||| Sbjct 225501 AGCGTTGAAGAGGGTGGG 225518 Score = 111 bits (122), Expect = 2e-18 Identities = 90/109 (83%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706 ||| |||| | ||| ||||||||||| ||| | || | || |||||||| ||||| ||| Sbjct 92368 GCCTCCAATTTCCTTGACATCAAGCCTCTCTTGGACGTTGGCTGCAAGACAGTGGCAAAC 92427 Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCA 2035755 | |||||||||||||| |||||||| ||||||||||| || ||||||| Sbjct 92428 ATGATCAAGGGCAAGTCTCCCGAGGAAATCCGCAAGACTTTCAACATCA 92476 >seq98 Length=265896 Score = 98.7 bits (108), Expect = 2e-14 Identities = 77/92 (84%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 ||||||||||||||||||||| ||||| |||||||||||| |||||| ||| || ||| Sbjct 207547 GTACTTGGTGACGGCCTTGGTGCCCTCAGAGACGGCGTGCTTGGCCAATTCACCTGGCAG 207488 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGG 1485562 ||||| || || | ||||||||||| |||| Sbjct 207487 GATCAACCGGACAGATGTCTGGATCTCTCGGG 207456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916235017921973