Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001835465.1_202016-10-24] 107 sequences; 45,820,083 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq1 129 4e-25 seq47 105 4e-18 >seq1 Length=17084797 Score = 129 bits (142), Expect = 4e-25 Identities = 160/217 (74%), Gaps = 8/217 (4%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 |||||||||||| | ||| ||||||||| ||||| ||||| ||| |||| |||| Sbjct 1761270 CAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATC 1761211 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| || |||||||||| ||| |||||||| | || | ||||||||||| Sbjct 1761210 CTCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTC 1761151 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTA 34940 | || || ||||| || | ||||| || | ||| || |||| ||| | Sbjct 1761150 CTGGATCTTGGACTTGAC--AT--TGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGA 1761095 Query 34941 TGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | ||||| |||||||||||||| || || |||||||| Sbjct 1761094 TCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 1761058 Score = 116 bits (128), Expect = 2e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| ||| | |||||||||||||| ||||| ||||| | | |||| | || Sbjct 3411891 AGGACCAAGTGCAGTGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGACCGTCT 3411950 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||| || |||||||||| || |||||||| | || | ||||||||||| Sbjct 3411951 TCCAGCTGCTTACCAGCGAAGATCAAGCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCT 3412010 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | ||| | ||| || || | ||| || ||| Sbjct 3412011 TGGATCTTGGACTTGACGTTGTCGATGGTATCAGAAGACTCCACCTCGAGGGTGATAGTC 3412070 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || |||||||| |||||||| ||||| Sbjct 3412071 TTGCCGGTCAGGGTCTTGACAAAGATTTGCAT 3412102 Score = 109 bits (120), Expect = 4e-19 Identities = 148/204 (73%), Gaps = 8/204 (4%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||| | || ||||||||||||||| ||||| || ||| | || |||| Sbjct 3412347 AGGACAAGGTGGAGAGTAGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTTCGGCCATCC 3412406 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || |||||||| ||||| |||||||| | || | ||||||||||| Sbjct 3412407 TCAAGCTGCTTACCAGCGAAGATGAGTCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCC 3412466 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || || || || || | ||||| ||| | ||| || || | ||| || Sbjct 3412467 TGGATCTTGGACTTCAC--AT--TGTCGATGGTATCAGAAGACTCCACCTCGAGGGTGAT 3412522 Query 34942 GGTCTTTCCCGTGAGGGTCTTTAC 34965 ||||||||| ||||||||||| || Sbjct 3412523 GGTCTTTCCGGTGAGGGTCTTGAC 3412546 Score = 100 bits (110), Expect = 2e-16 Identities = 153/216 (71%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||||| |||||||||||||||||||| ||||| | |||| | || Sbjct 3412119 AGGACAAGGTGAAGTGTGCTCTCCTTCTGAATGTTGTAGTCGCTCAAAGTGCGGCCGTCC 3412178 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || || ||||| || || ||||| || | || | |||||||| || Sbjct 3412179 TCAAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGATCCGGGGGGATACCCTCCTTATCC 3412238 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || ||| ||||| || | ||||| ||| | ||| || || | ||| || Sbjct 3412239 TGAATCTTTGACTTGAC--AT--TGTCGATGGTATCAGAAGACTCCACCTCGAGGGTGAT 3412294 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || || |||||||| || || |||||||| Sbjct 3412295 AGTCTTGCCAGTCAGGGTCTTGACGAAAATCTGCAT 3412330 >seq47 Length=144723 Score = 105 bits (116), Expect = 4e-18 Identities = 132/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 ||||||| ||||| ||||| || ||| | || |||| || || ||||| || || |||| Sbjct 138394 CCTTCTGGATGTTGTAGTCGGACAGGGTTCGGCCATCCTCGAGCTGCTTGCCAGCAAAGA 138453 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 ||| ||| |||||||| | || | ||||||||||| | || || ||||| Sbjct 138454 TCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 138513 Query 34908 CTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAA 34967 | |||| || || |||||| |||| ||| |||||||| ||||| |||||||| || | Sbjct 138514 CGATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGA 138573 Query 34968 A 34968 | Sbjct 138574 A 138574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325692375276233