Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001835465.1_202016-10-24] 107 sequences; 45,820,083 total letters Query= NC_023423.1 Length=610033 Score E Sequences producing significant alignments: (Bits) Value seq50 91.5 6e-13 >seq50 Length=288516 Score = 91.5 bits (100), Expect = 6e-13 Identities = 120/163 (74%), Gaps = 5/163 (3%) Strand=Plus/Plus Query 309684 CTCCATCAACTTGGCGATAGTCATACGAGAAGGAATGGCAAGAGGGTTGATGAGAATGTC 309743 ||| ||||| | ||||| |||||||| || |||||||| |||||||||||| ||| || Sbjct 158068 CTCAATCAAGTGAGCGATTGTCATACGGGATGGAATGGCGTGAGGGTTGATGATAATATC 158127 Query 309744 AGGTCTCATTCCGGTGATTGGGTTGAAAGGCATAT-CTTCTTCAGGTACAATCAAACCAA 309802 || ||| || ||| |||| ||||||| || || |||| | | | ||||| Sbjct 158128 TGGAGTCACACCCTCTCTTG---TGAAGGGCATATCCTCCTGTCGGTA-AGTAACACCAA 158183 Query 309803 TAGTTCCCTTTTGAGCGTGCCTGGAAGCAAACTTGTCACCAAT 309845 |||| ||||| ||| |||| | || || |||||||| ||||| Sbjct 158184 TAGTGCCCTTCTGACCGTGACGAGAGGCGAACTTGTCTCCAAT 158226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1951971723965096