Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001835465.1_202016-10-24] 107 sequences; 45,820,083 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq1 100 2e-16 >seq1 Length=17084797 Score = 100 bits (110), Expect = 2e-16 Identities = 156/218 (72%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CGCAATGGTGCGAG 29629 ||| || || | ||||| ||| || || |||||||| || || | ||| | |||| Sbjct 3412115 ACGGAGGACAAGGTGAAGTGTGCTCTCCTTCTGAATGTTGTAGTCGCTCAAAG-TGCGGC 3412173 Query 29630 AATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTT 29689 || || || || ||||||||| | || | | ||||||||||| || |||||||| | Sbjct 3412174 CGTCCTCAAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGATCCGGGGGGATACCCTCCT 3412233 Query 29690 TGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTT 29748 | || || ||| |||| |||||| | || | || |||||| || || || || || Sbjct 3412234 TATCCTG-AATCTTTGACTTGACATTGTCGATGGTATCAGAAGACTCCACCTCGAGGGTG 3412292 Query 29749 ATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| |||||||| | ||| || || || |||||||| Sbjct 3412293 ATAGTCTTGCCAGTCAGGGTCTTGACGAAAATCTGCAT 3412330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385218697650087