Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20virens_20[genbank_20GCA_5F001835465.1_202016-10-24]
107 sequences; 45,820,083 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq1 123 5e-23
>seq1
Length=17084797
Score = 123 bits (136), Expect = 5e-23
Identities = 158/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655
|| ||||| ||||| |||||||| || ||||| || || || || || ||| ||| |||
Sbjct 3412630 CGGAGAACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTTCGGCCG 3412689
Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715
|| || ||||| || ||||||||||| || | || || || ||||| || || |||||
Sbjct 3412690 TCCTCGAGTTGCTTGCCAGCAAAGATAAGACGCTGCTGGTCAGGAGGGATACCCTCCTTG 3412749
Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775
|| |||||||| | || ||||| || || || || | || || || | || ||
Sbjct 3412750 TCCTGAATCTTGGACTTCACATTGTCGATGGTGTCGGATGACTCCACCTCAAGGGTGATA 3412809
Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTAT 82813
||||| || |||| ||||| || || || ||||| ||
Sbjct 3412810 GTCTTACCGGTCAGGGTCTTGACGAAGATTTGCATGAT 3412847
Score = 109 bits (120), Expect = 1e-18
Identities = 119/158 (75%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712
||||| || || || || ||||||||||| || | || ||||| || || || || |||
Sbjct 3412173 CCGTCCTCAAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGATCCGGGGGGATACCCTCC 3412232
Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTT 82772
||||| |||||||||| || ||||| || || |||||| || || || || | ||
Sbjct 3412233 TTATCCTGAATCTTTGACTTGACATTGTCGATGGTATCAGAAGACTCCACCTCGAGGGTG 3412292
Query 82773 ATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|| |||||||| |||| ||||| || || ||||||||
Sbjct 3412293 ATAGTCTTGCCAGTCAGGGTCTTGACGAAAATCTGCAT 3412330
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 981825853976273
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |