Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001835465.1_202016-10-24] 107 sequences; 45,820,083 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq93 172 5e-38 seq1 98.7 9e-16 >seq93 Length=305044 Score = 172 bits (190), Expect = 5e-38 Identities = 935/1465 (64%), Gaps = 66/1465 (5%) Strand=Plus/Plus Query 146893 TTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGC 146952 ||||| || || |||||||| || || ||||| | | || | ||| ||| | ||| Sbjct 224209 TTGACAACCTGGAACTCGCCGGCAAGGACACGGCGCTGGTAGATGTTGGAGGTGTAGGGC 224268 Query 146953 TCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACC 147012 || || ||||||| ||||| | || |||| ||| | || || ||||| || || Sbjct 224269 TCGAAGCACTCATTGTTGCCCAGGATCTGGGAAGTGCTGGCAGTTGGCATAGGGGCAACG 224328 Query 147013 AACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCAC 147072 | ||| || |||| ||||| | | ||| | ||||| | || | ||| |||||| Sbjct 224329 AGCAAGCTGTTGCGCACACCGTGCTCCTTGATCTGCTCCTTGAGAGAGTCCCACTCCCAC 224388 Query 147073 A--TCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCGGGAC 147130 | ||| |||||| | || | |||||||||| | || || | || | || || Sbjct 224389 AAGTCG--GAGGGCTTGACATCCCACATGTCGAATTGAAGGATGCCCTCAGATGCAGGTG 224446 Query 147131 TGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCCAATTC-ACAGCTTGCCTCGAGC 147189 || ||| | |||| || ||| || || | || | || ||||| || Sbjct 224447 ATCCCTTGAATGATTGGTAGGGGCCCTCGACCTTGGCAATCTCCATAGAA-GCCTCAAGG 224505 Query 147190 GCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTCG 147249 || | | ||| || || || ||| || ||||| || || || || ||| Sbjct 224506 GCAGCGTGGTAGATTGTCTCAAAGATCTGCTTGTTCAGCTCGCGAGCCTCAGGAGACTCA 224565 Query 147250 TAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGGT 147309 ||||||| ||||| | || ||||| || | |||||||| ||| || ||||||||| Sbjct 224566 AAAGGCATGCGCAGGGCAAGGAAAGCATCAGCAAGACCCTGGACACCAACACCGATAGGT 224625 Query 147310 C---GATGCTTTTCGTTGCTGCGCTTCGCGCTCGCT--ATGGGATAGTGGTTGCGATCAA 147364 | || || | ||||||| | || || || | || |||||||| ||||| Sbjct 224626 CTGTGACGCAT---GTTGCTGT--TACGGGCCTCCTGGACAGGGTAGTGGTTCACATCAA 224680 Query 147365 TAATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCAT 147424 |||||||||| |||||||| || || || || || | | | || |||| || |||| Sbjct 224681 TAATCTTGTTCAGGTTACGGACAACCACCTTGGTGACTTCGTGAAGCTTCTTAAAGTCAT 224740 Query 147425 AAGTCCC------GTCTTCGACACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGC 147478 | ||| || |||||| || ||| || | ||| | ||| |||| |||| Sbjct 224741 AGCACCCTTCGTTGTAGTCGACA--TAGGCA--GG--GAGGGCCAAAGAGGCCAAGTTGC 224794 Query 147479 AGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTT---GCTGC 147535 |||| || ||| || | | | | ||||| | || || | ||| ||||| ||||| Sbjct 224795 AGACAGCAACCTCATCAGGGGCACAGTACTCAATAATCTCAGTGCAGAGGTTAGAGCTGC 224854 Query 147536 ATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCA 147595 ||| |||| || | ||| ||||| || || ||||| ||| ||| |||||| Sbjct 224855 ---GGATGGTACCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTAGAGCA 224911 Query 147596 TGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGAT--AAACCTATGCAGGTCCTGCGC 147653 || | || ||| |||||| || | ||| | ||| || | | ||| | ||| || Sbjct 224912 TGAAGGGGTTGCCAGTCTCGGTCTGGGCTTCCAGGATGGAATACCA--CAGCTTCTGAGC 224969 Query 147654 TCGCACCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTC 147713 || | || ||| || ||||| || |||||| ||| ||||| ||| ||||| Sbjct 224970 GCGGATAGTCTTGCGACCACGTCCCTCCTTCTCGTACTTCTCATACAAAGCCTCGAACTC 225029 Query 147714 GTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGTC 147773 ||||| ||||| || |||||||| || |||| | || ||||| |||| ||| ||| Sbjct 225030 CTCGCCATAGCAGTCAGCAAGGCCAGGGCACTCGTTGGGGCACATGAGCGTCCA---GTC 225086 Query 147774 ---GTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGC--GTACATAAGA 147828 || | | ||| || ||| || ||||| || | ||| || || | | ||||| Sbjct 225087 CAAGTTCTTCTCAACACGCTTCATGAAGAGATCGGGAATCCAGAGAGCAAGGA-ATAAG- 225144 Query 147829 TCGCGCGCTTTGCAATCCTCGGCGCCCATGTTGCGTTTC--AAATTAAGCACGCTATAGA 147886 ||||| || | ||||| || ||| || | | || ||| | | ||| Sbjct 225145 TCGCGAGCACGGACCTCCTCCTTACCGTGGTT--CTTGCGGAGATCAAGGAACTCAAAGA 225202 Query 147887 TGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGC---TTTCCGCCCT 147943 || |||||||| || || | ||||| ||| | ||||| |||| || || |||| Sbjct 225203 CATCAGCGTGCCATGGCTCCAGGTAGATGGCAAAGGCACCAGGACGCTTGTTGCCACCCT 225262 Query 147944 GGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAG 148003 ||||||| | | | ||||||| || || || | |||||| | ||| | | || Sbjct 225263 GGTCGACGTATCTGGCAGTGTTGTTGAAGACTCGAAGCATGGGAATGATACCGTTGGAAG 225322 Query 148004 TGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGCCAA 148063 | ||||||||| || | ||| ||| || | ||| ||||| | ||| | Sbjct 225323 TACCGTTGGTGCCCGCAATGTAAGAACCGGTGGCACGGATGCGGTGGACGTTCAAGCCGA 225382 Query 148064 TGCCGCC-GCCGTACTTTGATATGGCAGCGCAATCGCC--CAATGTCGTGTAGATGCCGT 148120 ||||||| ||| | ||| || || || ||| || | || || ||||| || | Sbjct 225383 TGCCGCCAGCCAT-CTTGGAAAT--CATGGCACACGTCTTCAGAGTGTCATAGATACCCT 225439 Query 148121 CGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCGCGTTC 148180 | ||||| |||| || | | ||| ||| || || ||| ||| || | | | || | Sbjct 225440 CAATGCTATCGTCCTTCATGTCAACCAAGAAGCATGAAGACAGCTGGGCCTGCGGGGTAC 225499 Query 148181 CCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTT--TTGACTCATCATGCGATA 148238 | || ||| |||||||| ||||| || || || || | || ||| | | | || Sbjct 225500 CAGCGTTGAAGAGGGTGGGGGAGGCGTGGGTGAAGAACTTGCTCGA--CATGAGGTGGTA 225557 Query 148239 CGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCAT 148298 ||||| | | || |||||||| || ||||| | || || ||||| | ||| Sbjct 225558 TGTCTCCAGGACACGCTCAATGTCGTCTCCCCAGATGCCAACAGCCACTCGCATAATCAT 225617 Query 148299 GTGCTGTGGTCGTTCGGCAA-CTTG 148322 |||||||||||| || ||| |||| Sbjct 225618 GTGCTGTGGTCGCTCAACAATCTTG 225642 >seq1 Length=17084797 Score = 98.7 bits (108), Expect = 9e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 131932 CTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAATA 131991 ||| || ||||||||||||||||||| || || || || ||||| || || | | | Sbjct 3412139 CTCCTTCTGAATGTTGTAGTCGCTCAAAGTGCGGCCGTCCTCAAGCTGCTTGCCAGCAAA 3412198 Query 131992 GATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACTG 132051 ||| |||||||| ||||| || || || || || ||||| ||| ||| || | | Sbjct 3412199 GATAAGACGCTGCTGATCCGGGGGGATACCCTCCTTATCCTGAATCTTTGACTTGACATT 3412258 Query 132052 TTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAT 132111 || | ||||| | | |||||| |||| || | || || |||||||| || || | Sbjct 3412259 GTCGATGGTATCAGAAGACTCCACCTCGAGGGTGATAGTCTTGCCAGTCAGGGTCTTGAC 3412318 Query 132112 GAAAATCTGCAT 132123 |||||||||||| Sbjct 3412319 GAAAATCTGCAT 3412330 Score = 86.0 bits (94), Expect = 6e-12 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| ||||| |||| || | | | ||||| || || |||||||||||||||| ||| Sbjct 1761279 ACGCAGGCGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGGGT 1761220 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || ||| || ||||| ||||| | |||| | ||||| || || || || ||||| Sbjct 1761219 GCGGCCATCCTCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGGAATGCC 1761160 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || || || || | | || | || |||| | |||||| || | Sbjct 1761159 CTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAG 1761100 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | ||| || || || || || || | |||||||||||| Sbjct 1761099 GGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 1761058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476610562532520