Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001835465.1_202016-10-24] 107 sequences; 45,820,083 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq58 127 2e-24 >seq58 Length=533810 Score = 127 bits (140), Expect = 2e-24 Identities = 197/278 (71%), Gaps = 14/278 (5%) Strand=Plus/Minus Query 147232 AGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTCCC-GCAGTCCACGTACCTGGCCCCAAA 147290 |||||||| || |||| ||| |||||| |||| ||| || |||||| ||| ||||| Sbjct 276574 AGCTGGTCGACACCCTTGCCGGCGTAGTCTGTCTTTGCA-TCTACGTACTCGGCGCCAAA 276516 Query 147291 GTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGCGAGAAGCC 147350 ||||| ||||||||||||||| || || ||||||||||| || | ||| | | ||| Sbjct 276515 GTGCCGCCACTGGAAGCCGTAGACGGGGCCCAGGTCGCCAACCTCGCGGTGGGTCAGGCC 276456 Query 147351 CGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGAT------GCCCACTCCCTT 147404 | | | ||| |||||| ||||||||| | |||||||||| ||| ||| | || Sbjct 276455 GACGCTGTCGAGGAACTCGCGGGACCCGTTGCCGTCCCAGATCTTGACGCCGACTTCATT 276396 Query 147405 GGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGAACCAGAGCAGCTCCTCCAAAAC 147464 | || ||| || || |||| |||| |||||||||||| ||||| | | || Sbjct 276395 GAGGGCGAGGGCC---GA---CGTGTTGCCCTCGATGAACCAGAGGAGCTCGGCGATGAC 276342 Query 147465 CCCCCTCCAAAAGACCCTCTTGGTGGTCAGCAGGGGGA 147502 | | ||||||| ||| || || ||||| |||| Sbjct 276341 GGCACGGAGGAAGACCCGCTTTGTTGTTAGCAGAGGGA 276304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583487219584800