Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001835465.1_202016-10-24] 107 sequences; 45,820,083 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq97 233 3e-55 seq93 149 9e-30 >seq97 Length=261666 Score = 233 bits (258), Expect = 3e-55 Identities = 385/543 (71%), Gaps = 17/543 (3%) Strand=Plus/Plus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| |||||||| || ||||||||||| ||||| ||||||||||| ||| | |||| Sbjct 3204 GATCTGGCAAATGTAC-AAGAAGGCCGAGGCTTCCTTCTGGACCGCCGAAGAGATTGACC 3262 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGT--CGC-TGAGCGACGACGAGCGCCATTTCATCA 1455891 | | || | | ||||| ||| ||| ||| |||||| | |||||| Sbjct 3263 TGTCCAAGGATCTGCACGACTGGAACAACCGCCTGAACGATGACGAGAAGTACTTCATCT 3322 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 ||| |||| ||||| ||| |||||| |||||||| || ||||||||||| || Sbjct 3323 CTCACATCCTGGCCTTCTTT-GCCGCCTCTGATGGCATTGTCAACGAGAACCTGGTCGAG 3381 Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011 ||||| | |||||||| | || ||||| || | || ||||| ||||||||| Sbjct 3382 CGCTTCAGCGGCGAGGTCCAGATCCCCGAGGCTCGATGCTTCTACGGCTTCCAGATCATG 3441 Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCG 1456071 || || ||||||||||| || |||||||| || || |||||||||||| ||||||| Sbjct 3442 ATGGAGAACATCCACTCCGAGACCTACTCCCTGCTCATCGACACCTACATCAAGGAGAAC 3501 Query 1456072 GTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCC 1456131 | || || | ||||| |||||| || || | || | | | || ||||| Sbjct 3502 AGCCAGCGCAACTATCTCTTCAACGCCATTGAGACTATCCCTTGCATTCGCAAGAAGGCT 3561 Query 1456132 GACTGGGCGATGAAGTGGATC---AACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCG 1456188 |||||||| || ||||||||| ||||| | ||| | |||||| |||| || | Sbjct 3562 GACTGGGCCATCAAGTGGATCCAGGACAAGAA----CTCTTC-CTTTGCTCAGCGCCTGG 3616 Query 1456189 TCGGCTTTGCCG-CGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGC-GCCATCTTTTGG 1456246 | | |||||| | ||||||||| ||||| ||| ||| | | ||| ||||||| ||| Sbjct 3617 TTGCCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGC-GCCTTTGCATCCATCTTCTGG 3675 Query 1456247 CTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGA 1456306 ||||||||||| || ||||||||||| | | |||| |||||| | ||| ||| || Sbjct 3676 CTCAAGAAGCGAGGTCTCATGCCCGG-CCTGACCTTTTCCAACGAGCTCATCTCTCGTGA 3734 Query 1456307 CGA 1456309 ||| Sbjct 3735 CGA 3737 Score = 86.0 bits (94), Expect = 9e-11 Identities = 174/253 (69%), Gaps = 4/253 (2%) Strand=Plus/Plus Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582 |||||| ||| || ||| || ||| ||||||| | | |||| | || || || Sbjct 3814 ATCATCACCGATGCTGTCCGAATTGAGCAAGAGTTCTTGACCGAGGCTCTCCCCTGCGCC 3873 Query 1456583 CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCC 1456642 || | ||||||||| ||| | | ||| |||||||| || ||| || || ||||||| Sbjct 3874 CTGCTGGGCATGAACTCCAACT-TGATGAAGCAGTACATCGAGTTT-GTTGCTGACCGCC 3931 Query 1456643 TGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATG 1456702 |||| | || |||||| | |||||| |||| | | ||||||| || | ||| Sbjct 3932 TGCTTGTTGCTCTCGGCAAC-GAGAAGATCTACAAGTCTTCCAACCCCTTTGACTTTATG 3990 Query 1456703 GAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCG-TGGCGAGTACGCC 1456761 ||| || || || | |||||||||||||| || ||| || | || ||| ||| Sbjct 3991 GAGAACATTTCTCTTGGTGGCAAGACCAACTTCTTTGAGAAGCGTGTTGCCGACTACCAG 4050 Query 1456762 AAGGCCGGCGTCA 1456774 |||||||| |||| Sbjct 4051 AAGGCCGGTGTCA 4063 >seq93 Length=305044 Score = 149 bits (164), Expect = 9e-30 Identities = 343/507 (68%), Gaps = 25/507 (5%) Strand=Plus/Minus Query 259681 GCACAAGGAGGTCCTCGACGCTGCCATCTGCCACGGCCGAGACTTTGGCTACTCGTACTT 259740 ||||||||||| |||||| ||||||| | | |||||||| |||| ||||| Sbjct 225747 GCACAAGGAGGAGCTCGACTCTGCCATTGTGTATGATCGAGACTTCAACTACCAATACTT 225688 Query 259741 TGGTCTGGCGACCTTGCGCCGGTCCTACCTGACCAAAG--TGC--GCGATATTGTCGTCG 259796 || | ||| ||| ||||| ||||| | ||| || || | ||||| | Sbjct 225687 CGGCTTCAAGACTTTGGAGCGGTCATACCTC-CTGAAGCTTGATGGCAAGATTGTTG--- 225632 Query 259797 AGCGGCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGTCG 259856 |||| || ||| | ||| | ||||| || || ||||| | |||| | |||| | | Sbjct 225631 AGCGACCACAGCACATGATTATGCGAGTGGCTGTTGGCA--TCTGGGGA-GACGACATTG 225575 Query 259857 ACAATGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCA-GTTGTTCACC 259915 | || |||||| || | | ||||| ||||||| |||| ||| |||||| Sbjct 225574 AGCGTGTCCTGGAG-ACATAC----CACCT-------CATGTCG-AGCAAGTTCTTCACC 225528 Query 259916 TCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTT 259975 || | ||||| ||||| || || || || |||| | ||| || || ||||| Sbjct 225527 CACGCCTCCCCCACCCTCTTCAACGCTGGTACCCCGCAGGCCCAGCTGTCTTCATGCTTC 225468 Query 259976 CTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCG 260035 || | |||||||||| |||| || ||||| ||||||||||| || ||| ||| || Sbjct 225467 TTGGTTGACATGAAGGACGATAGCATTGAGGGTATCTATGACACTCTGAAGACGTGTGCC 225408 Query 260036 CTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGC 260095 | || |||||| ||| ||||||||||| || || ||| | || ||| | || Sbjct 225407 ATGATTTCCAAGATGGCTGGCGGCATCGGCTTGAACGTCCACCGCATCCGTGCCACCGGT 225348 Query 260096 GCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTT 260155 | ||| | |||||||||||||| |||||||| | | ||||||||||| || || Sbjct 225347 TCTTACATTGCGGGCACCAACGGTACTTCCAACGGTATCATTCCCATGCTTCGAGTCTTC 225288 Query 260156 AACGACACGGCGCGCTACGTCGACCAG 260182 ||| |||| || | |||||||||||| Sbjct 225287 AACAACACTGCCAGATACGTCGACCAG 225261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177800879653334