Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001835465.1_202016-10-24] 107 sequences; 45,820,083 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq93 138 2e-27 >seq93 Length=305044 Score = 138 bits (152), Expect = 2e-27 Identities = 764/1201 (64%), Gaps = 36/1201 (3%) Strand=Plus/Plus Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 ||||| || ||||| || || | ||| |||||||||||||| || || | || || Sbjct 224278 TCATTGTTGCCCAGGATCTGGGAAGTGCTGGCAGTTGGCATAGGGGCAACGAGCAAGCTG 224337 Query 68839 TTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGAT 68898 || | | ||| || |||| | || || ||| | ||| ||||| | || || Sbjct 224338 TTGCGCACACCGTGCTCCTTGATCTGCTCCTTGAGAGAGTCCCACTCCCACAAGTCGGAG 224397 Query 68899 GGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCATTATAT 68958 || |||| ||| | ||| |||| || || || | | |||| |||||| || || Sbjct 224398 GGCTTGACATCCCACATGTCGAATTGAAGGATGCCCTCAGATGCAGGTGATCCCTTGAAT 224457 Query 68959 GTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTAATAA 69018 | || || || || || | || | || | ||||| | ||| ||| || Sbjct 224458 GATTGGTAGGGGCCCTCGACCTTGGCAATCTCCATAGAAGCCTCAAGGGCAGCGTGGTAG 224517 Query 69019 ATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATAATGT 69078 ||||| || || |||| ||| || || || | || || || || || || ||| Sbjct 224518 ATTGTCTCAAAGATCTGCTTGTTCAGCTCGCGAGCCTCAGGAGACTCAAAAGGC--ATGC 224575 Query 69079 AAAAG--AATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCT 69136 | | || || ||||| || | ||||| || |||| |||||||||||| || | | Sbjct 224576 GCAGGGCAAGGAAAGCATCAGCAAGACCCTGGACACCAACACCGATAGGTCTGTGACGCA 224635 Query 69137 TATTTGAACTTTCAG--CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAG 69194 | || | || | | || ||||| ||| || | || | ||| ||||| || || || Sbjct 224636 TGTT-GCTGTTACGGGCCTCCTGGAC-AGGGTAGTGGTTCACATCAATAATCTTGTTCAG 224693 Query 69195 ATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATCGTCCATC--T 69252 || ||||| || || || || || | || || ||| ||| | | || || | Sbjct 224694 GTTACGGACAACCACCTTGGTGACTTCGTGAAGCTTCTTAAAGTCATAGCACCCTTCGTT 224753 Query 69253 ATAACAAACATATTCAGTG----CTACAGATGCTAGATTACAAACTGCTACCTCATTAGA 69308 || ||||| ||| | | | ||| || | || || || || ||||||| || Sbjct 224754 GTAGTCGACATAGGCAGGGAGGGCCAAAGAGGCCAAGTTGCAGACAGCAACCTCATCAGG 224813 Query 69309 ATTTGCA---TATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATT 69365 ||| || | || ||||| || || || ||| | ||| || ||||| || Sbjct 224814 G---GCACAGTACTCAATAATCTCAGTGCAGAGGTTAGAGCTGCGGATGGTACCCAGGTT 224870 Query 69366 TTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTC 69425 | ||| || ||||| ||| ||| ||||||||| || || || || | ||||| || Sbjct 224871 CTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTAGAGCATGAAGGGGTTGCCAGTCTC 224930 Query 69426 AATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAACG 69485 |||| | ||| | || || | ||| | | ||| || |||||| || Sbjct 224931 GGTCTGGGCTTCCAGGATGGAATACCACAGCTTCTGAGCGCGGATA---GTCTTGCGACC 224987 Query 69486 -CTTCTCT--TTTTCATA-TTGTG-TATATAGCCGTTCGAATTCATCTCCCCAAA-CA-T 69538 | || || || || || || | || | |||| ||||| || ||| ||| | || | Sbjct 224988 ACGTCCCTCCTTCTCGTACTTCTCATACAAAGCC--TCGAACTC--CTCGCCATAGCAGT 225043 Query 69539 CATCCAATCCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTC 69598 || | | ||||| || || || || ||||| | | ||| | | | || ||| | Sbjct 225044 CAGCAAGGCCAGGGCACTCGTTGGGGCACATGAGCGTCCAGTCCAAGTTCTTCTCAACAC 225103 Query 69599 GTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTT 69658 | ||||| || |||||||||||||| ||||| | || | || | | | || | Sbjct 225104 GCTTCATGAAGAGATCGGGAATCCAGAGAGCAAGGAATAAGTCGCGAGCACGGACCTCCT 225163 Query 69659 CATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTA 69718 | || || || || ||||| || ||||| | | ||||| |||||||| || | Sbjct 225164 CCTTACCGTGGTTCTTGCGGAGATCAAGGAACTCAAAGACATCAGCGTGCCATGGCTCCA 225223 Query 69719 GATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGT 69778 | || || || | | | || || || || || || ||||| || | |||||||||||||| Sbjct 225224 GGTAGATGGCAAAGGCACCAGGACGCTTGTTGCCACCCTGGTCGACGTATCTGGCAGTGT 225283 Query 69779 TATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATAT 69838 | || |||||| ||||| ||||| ||||| || || |||| || || || | ||| | Sbjct 225284 TGTTGAAGACTCGAAGCATGGGAATGATACCGTTGGAAGTACCGTTGGTGCCCGCAATGT 225343 Query 69839 AACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGA 69898 || || | || || || | | || || || || ||||| || || | Sbjct 225344 AAGAACCGGTGGCACGGATGCGGTGGACGTTCAAGCCGATGCCGCCAGCCATCTTGGAAA 225403 Query 69899 TTAGAGCACAACGT-TTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTA 69957 | | |||| |||| |||| |||||||| |||||||| |||||||| || |||||| | Sbjct 225404 TCATGGCAC-ACGTCTTCAGAGTGTCATAGATACCCTCAATGCTATCGTCCTTCATGTCA 225462 Query 69958 A 69958 | Sbjct 225463 A 225463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686907881259480