Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001835465.1_202016-10-24] 107 sequences; 45,820,083 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq1 98.7 8e-16 >seq1 Length=17084797 Score = 98.7 bits (108), Expect = 8e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 27057 TCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAA 27116 || || || || ||||||||||||| | |||| ||||||| ||||| ||||| ||| | Sbjct 3411912 TCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGACCGTCTTCCAGCTGCTTACCAGCGAAG 3411971 Query 27117 ATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTT 27176 || | ||||| || || || || | ||||| || || ||||||| || | | | Sbjct 3411972 ATCAAGCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCTTGGATCTTGGACTTGACGTTG 3412031 Query 27177 TCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACA 27236 || | || || | | || || || || || |||| ||||| ||||| || || ||| Sbjct 3412032 TCGATGGTATCAGAAGACTCCACCTCGAGGGTGATAGTCTTGCCGGTCAGGGTCTTGACA 3412091 Query 27237 AAGATTTGCATA 27248 |||||||||||| Sbjct 3412092 AAGATTTGCATA 3412103 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 27057 TCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAA 27116 || || ||||| ||||||||||||| |||| |||| || ||||| || || || | Sbjct 3412140 TCCTTCTGAATGTTGTAGTCGCTCAAAGTGCGGCCGTCCTCAAGCTGCTTGCCAGCAAAG 3412199 Query 27117 ATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTT 27176 || |||||||| |||||||| || | |||||| ||||| ||||| || | | Sbjct 3412200 ATAAGACGCTGCTGATCCGGGGGGATACCCTCCTTATCCTGAATCTTTGACTTGACATTG 3412259 Query 27177 TCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACA 27236 || | || || | | || || || || || |||| ||||| ||||| || || || Sbjct 3412260 TCGATGGTATCAGAAGACTCCACCTCGAGGGTGATAGTCTTGCCAGTCAGGGTCTTGACG 3412319 Query 27237 AAGATTTGCATA 27248 || || |||||| Sbjct 3412320 AAAATCTGCATA 3412331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424933845858984